RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781001|ref|YP_003065414.1| hypothetical protein
CLIBASIA_04510 [Candidatus Liberibacter asiaticus str. psy62]
         (93 letters)



>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis
           [TaxId: 1423]}
          Length = 363

 Score = 23.5 bits (50), Expect = 5.7
 Identities = 4/45 (8%), Positives = 12/45 (26%)

Query: 33  IWLSIFSMPSGSIEYRDTLDERVANSGLYMIVKKALVRSKKRKIA 77
           +W  I      S  + ++    +    +   + K  +        
Sbjct: 250 LWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTL 294


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 331,931
Number of extensions: 13102
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 6
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)