RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781001|ref|YP_003065414.1| hypothetical protein CLIBASIA_04510 [Candidatus Liberibacter asiaticus str. psy62] (93 letters) >d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Length = 363 Score = 23.5 bits (50), Expect = 5.7 Identities = 4/45 (8%), Positives = 12/45 (26%) Query: 33 IWLSIFSMPSGSIEYRDTLDERVANSGLYMIVKKALVRSKKRKIA 77 +W I S + ++ + + + K + Sbjct: 250 LWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKGYLDRAYETTL 294 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.135 0.380 Gapped Lambda K H 0.267 0.0649 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 331,931 Number of extensions: 13102 Number of successful extensions: 24 Number of sequences better than 10.0: 1 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 6 Length of query: 93 Length of database: 2,407,596 Length adjustment: 56 Effective length of query: 37 Effective length of database: 1,638,716 Effective search space: 60632492 Effective search space used: 60632492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.1 bits)