Query         gi|254781002|ref|YP_003065415.1| hypothetical protein CLIBASIA_04515 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 108
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:02:04 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781002.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2axtt1 f.23.34.1 (T:1-30) Pho  32.4      13 0.00098   14.9   3.2   17    2-18      1-17  (30)
  2 d1nxha_ a.200.1.1 (A:) Hypothe   9.8      39  0.0028   12.4   0.6   33   17-50     66-104 (124)
  3 d2axte1 f.23.38.1 (E:3-84) Cyt   8.4      52  0.0038   11.7   2.3   15   79-93     24-38  (82)
  4 d1dxxa1 a.40.1.1 (A:9-119) Dys   8.0      55   0.004   11.6   2.1   14   71-84     97-110 (111)
  5 d3dtub2 f.17.2.1 (B:30-129) Ba   7.3      59  0.0043   11.4   3.1   27   69-95     66-92  (100)
  6 d1wjoa_ a.40.1.1 (A:) Fimbrin    7.2      50  0.0037   11.7   0.3   15   68-83     99-113 (124)
  7 d1sh5a1 a.40.1.1 (A:8-127) Act   6.2      68  0.0049   11.0   2.6   14   71-84     98-111 (120)
  8 d3ehbb2 f.17.2.1 (B:1-107) Bac   5.3      77  0.0056   10.7   3.2   26   70-95     73-98  (107)
  9 d2e74h1 f.23.27.1 (H:3-29) Pet   5.3      77  0.0056   10.7   1.7   11   71-81      8-18  (27)
 10 d1aoaa2 a.40.1.1 (A:260-375) F   4.5      88  0.0064   10.4   2.0   12   68-80    103-114 (116)

No 1  
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=32.41  E-value=13  Score=14.93  Aligned_cols=17  Identities=47%  Similarity=1.110  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             56999999999999999
Q gi|254781002|r    2 MEMIFFAFVFTCILLLW   18 (108)
Q Consensus         2 memiffafvftcilllw   18 (108)
                      ||-|-+.+.|.|+.-|.
T Consensus         1 me~i~yv~ifac~i~lf   17 (30)
T d2axtt1           1 METITYVFIFACIIALF   17 (30)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CCEEEHHHHHHHHHHHH
T ss_conf             95130179999999999


No 2  
>d1nxha_ a.200.1.1 (A:) Hypothetical protein MTH393 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=9.85  E-value=39  Score=12.38  Aligned_cols=33  Identities=21%  Similarity=0.304  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q ss_conf             9999999999999745689------888899999999986
Q gi|254781002|r   17 LWCVFIGLIACWIVDRWEY------FFIRRKYVLTAILLN   50 (108)
Q Consensus        17 lwcvfigliacwivdrwey------ffirrkyvltailln   50 (108)
                      .--|-|.|--||++|-.+-      =.||+|-|- .|+-+
T Consensus        66 ~~kvd~DL~LcWl~D~~~lis~~dad~ir~kVve-~il~~  104 (124)
T d1nxha_          66 REKLHSDLQLCWLVDVMEIISVDDAEALKDEITE-LVLAG  104 (124)
T ss_dssp             HHHHHHHTTHHHHTTTSCCSCHHHHHHHHHHHHH-HHHTT
T ss_pred             HHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH-HHHCC
T ss_conf             7773424362489999999201279999999999-99807


No 3  
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.41  E-value=52  Score=11.66  Aligned_cols=15  Identities=40%  Similarity=0.948  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999997
Q gi|254781002|r   79 SILSFFITFWIFVAS   93 (108)
Q Consensus        79 silsffitfwifvas   93 (108)
                      .|-|.||.=|+||.+
T Consensus        24 TIPslFiaGwlFVst   38 (82)
T d2axte1          24 TIPALFIAGWLFVST   38 (82)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHEEC
T ss_conf             433798741653024


No 4  
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.01  E-value=55  Score=11.55  Aligned_cols=14  Identities=21%  Similarity=0.838  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q gi|254781002|r   71 SIILAFVWSILSFF   84 (108)
Q Consensus        71 siilafvwsilsff   84 (108)
                      ..+|+++|+|...|
T Consensus        97 k~iL~llw~l~~~y  110 (111)
T d1dxxa1          97 KLTLGLIWNIILHW  110 (111)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             89999999999973


No 5  
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.30  E-value=59  Score=11.37  Aligned_cols=27  Identities=26%  Similarity=0.383  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             889999999999999999999999778
Q gi|254781002|r   69 PHSIILAFVWSILSFFITFWIFVASVS   95 (108)
Q Consensus        69 phsiilafvwsilsffitfwifvasvs   95 (108)
                      .|+..|..+|.+....|--.+.+.|+.
T Consensus        66 ~~n~~LEiiWTviP~lILi~l~~pS~~   92 (100)
T d3dtub2          66 THNSPLEIAWTIVPIVILVAIGAFSLP   92 (100)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             475468999999999999999999999


No 6  
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.21  E-value=50  Score=11.75  Aligned_cols=15  Identities=7%  Similarity=0.304  Sum_probs=9.8

Q ss_pred             CHHHHHHHHHHHHHHH
Q ss_conf             7889999999999999
Q gi|254781002|r   68 NPHSIILAFVWSILSF   83 (108)
Q Consensus        68 nphsiilafvwsilsf   83 (108)
                      ||.+ +|+|+|++...
T Consensus        99 n~k~-iL~~i~~L~~~  113 (124)
T d1wjoa_          99 KPKM-VMTVFACLMGR  113 (124)
T ss_dssp             CTTT-TTHHHHHHHHH
T ss_pred             CCHH-HHHHHHHHHHH
T ss_conf             8008-99999999998


No 7  
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.19  E-value=68  Score=11.03  Aligned_cols=14  Identities=29%  Similarity=0.933  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999999
Q gi|254781002|r   71 SIILAFVWSILSFF   84 (108)
Q Consensus        71 siilafvwsilsff   84 (108)
                      ..+|+++|++...|
T Consensus        98 k~iL~llw~L~~~~  111 (120)
T d1sh5a1          98 KLTLGLIWTIILHF  111 (120)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
T ss_conf             88999999999985


No 8  
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=5.33  E-value=77  Score=10.73  Aligned_cols=26  Identities=19%  Similarity=0.420  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999999999999778
Q gi|254781002|r   70 HSIILAFVWSILSFFITFWIFVASVS   95 (108)
Q Consensus        70 hsiilafvwsilsffitfwifvasvs   95 (108)
                      |+-.+..+|.+...+|-..+++.|..
T Consensus        73 ~n~~lEi~WTviP~lIL~~laipSl~   98 (107)
T d3ehbb2          73 HNTPIEVIWTLVPVLILVAIGAFSLP   98 (107)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             43178999999999999999999999


No 9  
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.25  E-value=77  Score=10.71  Aligned_cols=11  Identities=36%  Similarity=1.053  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q gi|254781002|r   71 SIILAFVWSIL   81 (108)
Q Consensus        71 siilafvwsil   81 (108)
                      +....|.|||-
T Consensus         8 ~llvvftwsia   18 (27)
T d2e74h1           8 ALLVVFTWSIA   18 (27)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHEEE
T ss_conf             88887632234


No 10 
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.52  E-value=88  Score=10.41  Aligned_cols=12  Identities=50%  Similarity=0.667  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             7889999999999
Q gi|254781002|r   68 NPHSIILAFVWSI   80 (108)
Q Consensus        68 nphsiilafvwsi   80 (108)
                      ||.++ |+|+|++
T Consensus       103 n~k~i-L~lv~~L  114 (116)
T d1aoaa2         103 NPKLN-LAFVANL  114 (116)
T ss_dssp             CHHHH-HHHHHHH
T ss_pred             CHHHH-HHHHHHH
T ss_conf             78899-9999998


Done!