Query gi|254781002|ref|YP_003065415.1| hypothetical protein CLIBASIA_04515 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 108 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:02:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781002.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2axtt1 f.23.34.1 (T:1-30) Pho 32.4 13 0.00098 14.9 3.2 17 2-18 1-17 (30) 2 d1nxha_ a.200.1.1 (A:) Hypothe 9.8 39 0.0028 12.4 0.6 33 17-50 66-104 (124) 3 d2axte1 f.23.38.1 (E:3-84) Cyt 8.4 52 0.0038 11.7 2.3 15 79-93 24-38 (82) 4 d1dxxa1 a.40.1.1 (A:9-119) Dys 8.0 55 0.004 11.6 2.1 14 71-84 97-110 (111) 5 d3dtub2 f.17.2.1 (B:30-129) Ba 7.3 59 0.0043 11.4 3.1 27 69-95 66-92 (100) 6 d1wjoa_ a.40.1.1 (A:) Fimbrin 7.2 50 0.0037 11.7 0.3 15 68-83 99-113 (124) 7 d1sh5a1 a.40.1.1 (A:8-127) Act 6.2 68 0.0049 11.0 2.6 14 71-84 98-111 (120) 8 d3ehbb2 f.17.2.1 (B:1-107) Bac 5.3 77 0.0056 10.7 3.2 26 70-95 73-98 (107) 9 d2e74h1 f.23.27.1 (H:3-29) Pet 5.3 77 0.0056 10.7 1.7 11 71-81 8-18 (27) 10 d1aoaa2 a.40.1.1 (A:260-375) F 4.5 88 0.0064 10.4 2.0 12 68-80 103-114 (116) No 1 >d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]} Probab=32.41 E-value=13 Score=14.93 Aligned_cols=17 Identities=47% Similarity=1.110 Sum_probs=13.6 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 56999999999999999 Q gi|254781002|r 2 MEMIFFAFVFTCILLLW 18 (108) Q Consensus 2 memiffafvftcilllw 18 (108) ||-|-+.+.|.|+.-|. T Consensus 1 me~i~yv~ifac~i~lf 17 (30) T d2axtt1 1 METITYVFIFACIIALF 17 (30) T ss_dssp CHHHHHHHHHHHHHHHH T ss_pred CCEEEHHHHHHHHHHHH T ss_conf 95130179999999999 No 2 >d1nxha_ a.200.1.1 (A:) Hypothetical protein MTH393 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=9.85 E-value=39 Score=12.38 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=20.6 Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH Q ss_conf 9999999999999745689------888899999999986 Q gi|254781002|r 17 LWCVFIGLIACWIVDRWEY------FFIRRKYVLTAILLN 50 (108) Q Consensus 17 lwcvfigliacwivdrwey------ffirrkyvltailln 50 (108) .--|-|.|--||++|-.+- =.||+|-|- .|+-+ T Consensus 66 ~~kvd~DL~LcWl~D~~~lis~~dad~ir~kVve-~il~~ 104 (124) T d1nxha_ 66 REKLHSDLQLCWLVDVMEIISVDDAEALKDEITE-LVLAG 104 (124) T ss_dssp HHHHHHHTTHHHHTTTSCCSCHHHHHHHHHHHHH-HHHTT T ss_pred HHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH-HHHCC T ss_conf 7773424362489999999201279999999999-99807 No 3 >d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]} Probab=8.41 E-value=52 Score=11.66 Aligned_cols=15 Identities=40% Similarity=0.948 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999997 Q gi|254781002|r 79 SILSFFITFWIFVAS 93 (108) Q Consensus 79 silsffitfwifvas 93 (108) .|-|.||.=|+||.+ T Consensus 24 TIPslFiaGwlFVst 38 (82) T d2axte1 24 TIPALFIAGWLFVST 38 (82) T ss_dssp HHHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHEEC T ss_conf 433798741653024 No 4 >d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Probab=8.01 E-value=55 Score=11.55 Aligned_cols=14 Identities=21% Similarity=0.838 Sum_probs=11.0 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254781002|r 71 SIILAFVWSILSFF 84 (108) Q Consensus 71 siilafvwsilsff 84 (108) ..+|+++|+|...| T Consensus 97 k~iL~llw~l~~~y 110 (111) T d1dxxa1 97 KLTLGLIWNIILHW 110 (111) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 89999999999973 No 5 >d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]} Probab=7.30 E-value=59 Score=11.37 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 889999999999999999999999778 Q gi|254781002|r 69 PHSIILAFVWSILSFFITFWIFVASVS 95 (108) Q Consensus 69 phsiilafvwsilsffitfwifvasvs 95 (108) .|+..|..+|.+....|--.+.+.|+. T Consensus 66 ~~n~~LEiiWTviP~lILi~l~~pS~~ 92 (100) T d3dtub2 66 THNSPLEIAWTIVPIVILVAIGAFSLP 92 (100) T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 475468999999999999999999999 No 6 >d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Probab=7.21 E-value=50 Score=11.75 Aligned_cols=15 Identities=7% Similarity=0.304 Sum_probs=9.8 Q ss_pred CHHHHHHHHHHHHHHH Q ss_conf 7889999999999999 Q gi|254781002|r 68 NPHSIILAFVWSILSF 83 (108) Q Consensus 68 nphsiilafvwsilsf 83 (108) ||.+ +|+|+|++... T Consensus 99 n~k~-iL~~i~~L~~~ 113 (124) T d1wjoa_ 99 KPKM-VMTVFACLMGR 113 (124) T ss_dssp CTTT-TTHHHHHHHHH T ss_pred CCHH-HHHHHHHHHHH T ss_conf 8008-99999999998 No 7 >d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Probab=6.19 E-value=68 Score=11.03 Aligned_cols=14 Identities=29% Similarity=0.933 Sum_probs=11.5 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254781002|r 71 SIILAFVWSILSFF 84 (108) Q Consensus 71 siilafvwsilsff 84 (108) ..+|+++|++...| T Consensus 98 k~iL~llw~L~~~~ 111 (120) T d1sh5a1 98 KLTLGLIWTIILHF 111 (120) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 88999999999985 No 8 >d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]} Probab=5.33 E-value=77 Score=10.73 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=22.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 89999999999999999999999778 Q gi|254781002|r 70 HSIILAFVWSILSFFITFWIFVASVS 95 (108) Q Consensus 70 hsiilafvwsilsffitfwifvasvs 95 (108) |+-.+..+|.+...+|-..+++.|.. T Consensus 73 ~n~~lEi~WTviP~lIL~~laipSl~ 98 (107) T d3ehbb2 73 HNTPIEVIWTLVPVLILVAIGAFSLP 98 (107) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 43178999999999999999999999 No 9 >d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]} Probab=5.25 E-value=77 Score=10.71 Aligned_cols=11 Identities=36% Similarity=1.053 Sum_probs=5.7 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254781002|r 71 SIILAFVWSIL 81 (108) Q Consensus 71 siilafvwsil 81 (108) +....|.|||- T Consensus 8 ~llvvftwsia 18 (27) T d2e74h1 8 ALLVVFTWSIA 18 (27) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHEEE T ss_conf 88887632234 No 10 >d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Probab=4.52 E-value=88 Score=10.41 Aligned_cols=12 Identities=50% Similarity=0.667 Sum_probs=0.0 Q ss_pred CHHHHHHHHHHHH Q ss_conf 7889999999999 Q gi|254781002|r 68 NPHSIILAFVWSI 80 (108) Q Consensus 68 nphsiilafvwsi 80 (108) ||.++ |+|+|++ T Consensus 103 n~k~i-L~lv~~L 114 (116) T d1aoaa2 103 NPKLN-LAFVANL 114 (116) T ss_dssp CHHHH-HHHHHHH T ss_pred CHHHH-HHHHHHH T ss_conf 78899-9999998 Done!