RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781002|ref|YP_003065415.1| hypothetical protein
CLIBASIA_04515 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>gnl|CDD|148330 pfam06664, MIG-14_Wnt-bd, Wnt-binding factor required for Wnt
           secretion.  MIG-14 is a Wnt-binding factor. Newly
           synthesized EGL-20/Wnt binds to MIG-14 in the Golgi,
           targetting the Wnt to the cell membrane for secretion.
           AP-2-mediated endocytosis and retromer retrieval at the
           sorting endosome would recycle MIG-14 to the Golgi,
           where it can bind to EGL-20/Wnt for next cycle of
           secretion.
          Length = 291

 Score = 28.4 bits (64), Expect = 0.36
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 3   EMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTIFS 62
            M+F   V  C  LL+ +F+ +     +    Y F R K+++   LL      +L   FS
Sbjct: 196 AMVFILIVGICAYLLYLIFLIIKVFSELRTRRYSFYRYKFLMLFTLLCAAITVALLGNFS 255

Query: 63  VEHYT-NPHSIILAFVWSILSFFI 85
               T    S      + +L+ ++
Sbjct: 256 SSFSTYYSSSAFFLGFYGLLNIYV 279


>gnl|CDD|165718 PLN00150, PLN00150, potassium ion transporter family protein;
           Provisional.
          Length = 779

 Score = 28.3 bits (63), Expect = 0.45
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 13/47 (27%)

Query: 8   AFVFTCILLLWCVFIGLIACWIVDRWE-------------YFFIRRK 41
           +F+F  I L W   + LI C+ + +W+              FFIR  
Sbjct: 237 SFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNG 283


>gnl|CDD|147912 pfam06011, TRP, Transient receptor potential (TRP) ion channel.
           This family of proteins are transient receptor potential
           (TRP) ion channels. They are essential for cellular
           viability and are involved in cell growth and cell wall
           synthesis. The genes for these proteins are homologous
           to polycystic kidney disease related ion channel genes.
          Length = 532

 Score = 28.0 bits (63), Expect = 0.51
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 10/112 (8%)

Query: 4   MIFFAFVFTCILLLWCVFIGLIACWIV------DRWEYFFIRRKYVLTAILLNYQFFYSL 57
            IFF      I++L   F  ++           D++  F  +    L   LL     +  
Sbjct: 254 FIFFLIFIALIVVLVIQFKFILELLARFGKMKPDKFAEFRKKWWPFLKGTLLRLVLIFFP 313

Query: 58  Q-TIFSVEHYTN---PHSIILAFVWSILSFFITFWIFVASVSMGRRVIQYFK 105
              I S+  +T      +++LA V+  L   +  W     +S+ R+ ++ + 
Sbjct: 314 PIVILSLWQFTQADSAAAVVLAVVFLALLLGLLGWAAFRVISIARKSVRLYG 365


>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase.
          Length = 364

 Score = 26.5 bits (59), Expect = 1.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 61 FSVEHYTNPHSIILAFVW 78
          F +EH+ NPHS    + W
Sbjct: 22 FLIEHFGNPHSRTHLYGW 39


>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter.  This
           model describes ABC-type bacteriocin transporter. The
           amino terminal domain (pfam03412) processes the
           N-terminal leader peptide from the bacteriocin while
           C-terminal domains resemble ABC transporter membrane
           protein and ATP-binding cassette domain. In general,
           bacteriocins are agents which are responsible for
           killing or inhibiting the closely related species or
           even different strains of the same species. Bacteriocins
           are usually encoded by bacterial plasmids. Bacteriocins
           are named after the species and hence in literature one
           encounters various names e.g., leucocin from Leuconostic
           geldium; pedicocin from Pedicoccus acidilactici; sakacin
           from Lactobacillus sake etc.
          Length = 708

 Score = 25.5 bits (56), Expect = 3.0
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 41  KYVLTAILLNYQFFYSLQTIFSVEHYTNPHSIILAFVWSILSFFITFWIFVA-SVSMGRR 99
            Y+     L   FF + +T   V  +T+  SII A   +ILS F+  WI V   + + R+
Sbjct: 234 SYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALASTILSLFLDMWILVIVGLFLVRQ 293

Query: 100 VIQYF 104
            +  F
Sbjct: 294 NMLLF 298


>gnl|CDD|184256 PRK13700, PRK13700, conjugal transfer protein TraD; Provisional.
          Length = 732

 Score = 25.3 bits (55), Expect = 3.3
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 3   EMIFFAFVF-TCILLLWCVFIGLIACWIVDR 32
           E ++ AFV    + L+ C+    +  WI+ R
Sbjct: 106 EQLWSAFVLAAVVALVICLITFFVVSWILGR 136


>gnl|CDD|177505 PHA03000, PHA03000, Hypothetical protein; Provisional.
          Length = 566

 Score = 25.0 bits (55), Expect = 4.3
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 37 FIRRKYVLTAILLNYQF----FYSLQTIFSVEHYTNPHSIILAFVWSILS 82
          FIRRKY++  I  N  F      S  + FS+ H      ++L F   +++
Sbjct: 3  FIRRKYLIYTIENNIDFLRDEVLSKVSNFSLNHVLALKYLVLNFPKDVIT 52


>gnl|CDD|183693 PRK12705, PRK12705, hypothetical protein; Provisional.
          Length = 508

 Score = 24.7 bits (54), Expect = 5.2
 Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 7/40 (17%)

Query: 2  MEMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRK 41
            M     +         + IGL+   +V   +      K
Sbjct: 1  FAMSILLVILL-------LLIGLLLGVLVVLLKKRQRLAK 33


>gnl|CDD|162177 TIGR01054, rgy, reverse gyrase.  Generally, these gyrases are
           encoded as a single polypeptide. An exception was found
           in Methanopyrus kandleri, where enzyme is split within
           the topoisomerase domain, yielding a heterodimer of gene
           products designated RgyB and RgyA.
          Length = 1171

 Score = 24.8 bits (54), Expect = 5.8
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 10/44 (22%)

Query: 11  FTCILLLWCVFIG----------LIACWIVDRWEYFFIRRKYVL 44
           FT    LW  F             +  WI+DR+     +R Y+L
Sbjct: 794 FTLSQKLWEAFNKRWLSAGRVQTPVLGWIIDRYRESREKRGYLL 837


>gnl|CDD|184523 PRK14125, PRK14125, cell division suppressor protein YneA;
          Provisional.
          Length = 103

 Score = 24.6 bits (54), Expect = 6.1
 Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 5/37 (13%)

Query: 1  MMEMIFFAFVFTCILLLWCVFIGLIACW--IVDRWEY 35
          + E      +F  +     + + +       VD+ +Y
Sbjct: 3  LKESKIHVSIFFVLT---ALVLLIFVYATVPVDKNQY 36


>gnl|CDD|181034 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase;
           Reviewed.
          Length = 314

 Score = 24.5 bits (54), Expect = 6.4
 Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 4/30 (13%)

Query: 69  PHSIILAFVWSILSFFITF----WIFVASV 94
              + L  V ++L   + +    W+F+A++
Sbjct: 110 RWVLYLIAVLTVLGLAVAYLLGPWVFLAAL 139


>gnl|CDD|183224 PRK11598, PRK11598, putative metal dependent hydrolase;
           Provisional.
          Length = 545

 Score = 24.3 bits (53), Expect = 6.9
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 20/74 (27%)

Query: 1   MMEMIF-------FAFVFTCILLLWCVFIGL----IACWI-----VDRWEYFFIRRKYVL 44
           M++ IF       FA + T  +LLW    G+    IACWI       RW     R   +L
Sbjct: 103 MIQNIFETTPAESFA-LMTPQMLLWLGLSGVLPALIACWIKIRPATPRWRSVLFRLANIL 161

Query: 45  TA---ILLNYQFFY 55
            +   ILL    FY
Sbjct: 162 VSVLLILLVAALFY 175


>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
          Length = 547

 Score = 24.2 bits (53), Expect = 6.9
 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 11/48 (22%)

Query: 37 FIRRKYVLTAILLNYQFFYSLQTIFSVEHYTNPHSIILAFVWSILSFF 84
           I+  Y+  A+LL Y        + +             F W  LS F
Sbjct: 6  HIKYYYLAGALLLLYLAVTGPSILLTF-----------LFAWISLSLF 42


>gnl|CDD|162065 TIGR00844, c_cpa1, na(+)/h(+) antiporter.  This model is specific
           for the fungal members of this family.
          Length = 810

 Score = 24.1 bits (52), Expect = 7.3
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 47  ILLNYQFFYSLQTIFSVEHYTNPHSIILAFVWS--ILSFFITFWIFVASVSMGRRVIQYF 104
           +LLNY +F  L +I   + + N    I   VW   ILS  + F   + +V + + +I   
Sbjct: 298 VLLNYAYFVYLGSILPWKDFNNGD--IGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDI 355

Query: 105 KRSR 108
           K  R
Sbjct: 356 KSWR 359


>gnl|CDD|181819 PRK09395, actP, acetate permease; Provisional.
          Length = 551

 Score = 24.2 bits (53), Expect = 7.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 67 TNPHSIILAFVWSILSFFITFW 88
          TN  +II+  ++ + +  IT+W
Sbjct: 32 TNWQAIIMFLIFVVFTLGITYW 53


>gnl|CDD|130079 TIGR01006, polys_exp_MPA1, polysaccharide export protein, MPA1
          family, Gram-positive type.  This family contains
          members from Low GC Gram-positive bacteria; they are
          proposed to have a function in the export of complex
          polysaccharides.
          Length = 226

 Score = 24.0 bits (52), Expect = 9.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 72 IILAFVWSILSFFITFWI 89
          +I+A ++ I+SF  TF+I
Sbjct: 25 LIVALIFLIISFIYTFFI 42


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.344    0.148    0.521 

Gapped
Lambda     K      H
   0.267   0.0726    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,829,330
Number of extensions: 108743
Number of successful extensions: 888
Number of sequences better than 10.0: 1
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 149
Length of query: 108
Length of database: 5,994,473
Length adjustment: 74
Effective length of query: 34
Effective length of database: 4,395,481
Effective search space: 149446354
Effective search space used: 149446354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 50 (23.0 bits)