BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781002|ref|YP_003065415.1| hypothetical protein
CLIBASIA_04515 [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781002|ref|YP_003065415.1| hypothetical protein CLIBASIA_04515 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 108

 Score =  215 bits (547), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MMEMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTI 60
           MMEMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTI
Sbjct: 1   MMEMIFFAFVFTCILLLWCVFIGLIACWIVDRWEYFFIRRKYVLTAILLNYQFFYSLQTI 60

Query: 61  FSVEHYTNPHSIILAFVWSILSFFITFWIFVASVSMGRRVIQYFKRSR 108
           FSVEHYTNPHSIILAFVWSILSFFITFWIFVASVSMGRRVIQYFKRSR
Sbjct: 61  FSVEHYTNPHSIILAFVWSILSFFITFWIFVASVSMGRRVIQYFKRSR 108


>gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 343

 Score = 23.5 bits (49), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 76  FVWSILSFFITFWIFVASVSMGRRVI-QYF 104
           F+  +++FF+  WI  A+    ++ I QYF
Sbjct: 40  FMTVLMAFFLVMWIINATDDDTKKAIEQYF 69


>gi|254780711|ref|YP_003065124.1| signal recognition particle protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 461

 Score = 23.1 bits (48), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 57  LQTIFSVEHYTNPHSIIL 74
           +Q I  ++  TNPH I+L
Sbjct: 202 MQEISEIKSLTNPHEILL 219


>gi|254781033|ref|YP_003065446.1| HemY domain-containing protein [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 492

 Score = 21.9 bits (45), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 48 LLNYQFFYSLQ--TIFSVEHYTNPHSIILA---------FVWSILSFFITFWIFVASVS 95
          L+ Y F  SL   +   V HY    SI             + SIL FF+  WI + +VS
Sbjct: 4  LIRYFFVISLVICSFIIVSHYPEDVSITWGNRLYRTSPFVILSILYFFLFAWILLFAVS 62


>gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 478

 Score = 21.9 bits (45), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 22 IGLIACWIVDRWEYFFIRRKYVLTAILLNYQFF 54
          IGL   +I DR+ Y FI+   ++++I++  + F
Sbjct: 64 IGLGGAYISDRFSY-FIKAILLMSSIIIFIKMF 95


>gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 248

 Score = 20.4 bits (41), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 22  IGLIACWIVD 31
           IGL+A W++D
Sbjct: 131 IGLLALWVID 140


>gi|254780690|ref|YP_003065103.1| flagellar biosynthesis protein FlhB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 354

 Score = 20.4 bits (41), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 67  TNPHSIILAFVWSILSFFITFWIFVASVSM 96
            NPHSI+    +++    I   +F+A++++
Sbjct: 179 ANPHSILYHAFFTVRKVLIMILLFIATLTV 208


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.344    0.148    0.521 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,535
Number of Sequences: 1233
Number of extensions: 2490
Number of successful extensions: 22
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 13
length of query: 108
length of database: 328,796
effective HSP length: 62
effective length of query: 46
effective length of database: 252,350
effective search space: 11608100
effective search space used: 11608100
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 32 (16.9 bits)