HHsearch alignment for GI: 254781003 and conserved domain: PRK05421
>PRK05421 hypothetical protein; Provisional.
Probab=99.85 E-value=5.6e-20 Score=127.21 Aligned_cols=220 Identities=20% Similarity=0.175 Sum_probs=115.6
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 78826999983014788667666776531018899999999986089889999507857999860333430786214556
Q gi|254781003|r 20 VAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLI 99 (304)
Q Consensus 20 ~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (304)
T Consensus 30 ~~~~~~llvWNI~Kq-----------~~~~W~~~L~~l~~-----~~dLvlLQEA~~~~~l~~~~~~~~~~~~~a~---- 89 (254)
T PRK05421 30 GSERFRLLVWNIYKQ-----------QRAGWLSVLKNLGK-----DADLVLLQEAQTTPELVQFATANYLAADQAP---- 89 (254)
T ss_pred CCCCEEEEEEEEECC-----------CCHHHHHHHHHHCC-----CCCEEEEEECCCCHHHHHHHHCCCCHHHHHH----
T ss_conf 876406999994216-----------65307999998606-----6878999613677657998852551788612----
Q ss_pred CCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEE-ECCEEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 7543223446315899825852676530122467655555565336999998-299499999940678887752000025
Q gi|254781003|r 100 NHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVE-INGKKIWVLDIHLKSFCFLDSLENTYS 178 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~v~n~Hl~~~~~~~~~~~~~~ 178 (304)
T Consensus 90 ----af~~~~~~~GVmtlS~~~p~~~c~~~~----~EP~lr~pKs~Lit~YpL~~~q~LlVVNiHaINF~~g~------- 154 (254)
T PRK05421 90 ----AFVLPQHPSGVMTLSKAHPVYCCPLRE----REPWLRLPKSALITEYPLPNGQTLLVVNIHAINFSVGV------- 154 (254)
T ss_pred ----HHHCCCCCCEEEECCCCCHHHHCCCCC----CCCCCCCCHHHHEEEECCCCCCEEEEEEEEEEEEECCH-------
T ss_conf ----220479863478754111254423566----67220363123047720589977999994067665156-------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 77899999999999998630368980999802688877662046898752255753111445678765646688820147
Q gi|254781003|r 179 PSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPID 258 (304)
Q Consensus 179 ~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD 258 (304)
T Consensus 155 ---~~y~~QL~~l~~~i~---~H~GPvI~AGDFNt---Ws~~R~~~l~~~~~~~gL~ev~f~--~d--~R~~-~~g~pLD 220 (254)
T PRK05421 155 ---DVYSKQLEPIGDQIA---HHSGPIILAGDFNT---WSRKRMNALKRFARELGLKEVRFT--DD--QRRK-AFGRPLD 220 (254)
T ss_pred ---HHHHHHHHHHHHHHH---HCCCCEEEECCCCC---CCHHHHHHHHHHHHHCCCCEEECC--CC--CCEE-CCCCCCC
T ss_conf ---999999999999998---48998798445330---139999999999997698087537--67--7345-2589865
Q ss_pred EEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 999862043100247217864113455444555576343899984
Q gi|254781003|r 259 YFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 259 ~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
T Consensus 221 hifyRgl~----------~~~a~---~~--~t~~SDHnPl~~~f~ 250 (254)
T PRK05421 221 HVFYRGLN----------VEKAS---VL--VTRASDHNPLLVEFS 250 (254)
T ss_pred EEEECCCE----------EEEEE---CC--CCCCCCCCCEEEEEE
T ss_conf 69987852----------33105---56--567787773889999