HHsearch alignment for GI: 254781003 and conserved domain: smart00476
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.94 E-value=1.1e-24 Score=152.90 Aligned_cols=249 Identities=16% Similarity=0.186 Sum_probs=142.9
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHCC------CC
Q ss_conf 8767882699998301478866766677653101889999999998608988999950785--799986033------34
Q gi|254781003|r 17 TASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSY--NAVAKVFPK------NT 88 (304)
Q Consensus 17 ~~~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~--~~~~~~~~~------~~ 88 (304)
T Consensus 11 ~~~~~~~lrIasFNIq~FG~s---------K~~~~~v~~~l~kI~~ry--Div~IQEV~d~~~~av~~L~~~LN~~~~~~ 79 (276)
T smart00476 11 LLHGAASLRICAFNIQSFGDS---------KMSNATLMSIIVKILSRY--DIALVQEVRDSDLSAVPKLMDQLNSDSPNT 79 (276)
T ss_pred HHCCCCCEEEEEEECHHHCCC---------CCCCHHHHHHHHHHHHHC--CEEEEEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 846666259999860323734---------013758999999999739--889999998488778999999996368888
Q ss_pred CEEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCE---EEEEEEECCC
Q ss_conf 3078621455675432234463158998258526765301224676555555653369999982994---9999994067
Q gi|254781003|r 89 WCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGK---KIWVLDIHLK 165 (304)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~~~v~n~Hl~ 165 (304)
T Consensus 80 y~~~iS~r-lG----r~-sykEqYafiYR~d~v~v~~~-y~y~D~~~~~~D~F~REPfv~~F~~~~t~~~~F~lv~~Ht~ 152 (276)
T smart00476 80 YSYVSSEP-LG----RN-SYKEQYLFLYRSDLVSVLDS-YLYDDGCECGNDVFSREPFVVKFSSPSTAVKEFVIVPLHTT 152 (276)
T ss_pred CCEEECCC-CC----CC-CCCEEEEEEEECCEEEECCC-EEECCCCCCCCCCEECCCEEEEEECCCCCCCCEEEEEEECC
T ss_conf 60785677-88----87-64267999982556887263-58247778988727139979999758966662699997448
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 88877520000257789999999999999---863036898099980268887766204689875225575311144567
Q gi|254781003|r 166 SFCFLDSLENTYSPSCSLLSQQAQWLKDW---ITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKD 242 (304)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~q~~~l~~~---~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (304)
T Consensus 153 P~~a~-----------~----Eid~L~dV~~dv~~~-~~~~diiilGDFNAdcsyv~~~~~~~irl~~~~~f~WlI~d~~ 216 (276)
T smart00476 153 PEAAV-----------A----EIDALYDVYLDVRQK-WGTEDVIFMGDFNAGCSYVTKKQWSSIRLRTSPTFHWLIPDSA 216 (276)
T ss_pred CCCCH-----------H----HHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCHHHHHHCCCCCCCCCEEECCCCC
T ss_conf 23027-----------8----999999999999874-4766679962456887655755653220102686137447887
Q ss_pred CCCCCCCCCCCCCCEEEEEECC-CHHHCCCCCCEEEEEECCCCCC--CCCCCCCCCCCEEEEEE
Q ss_conf 8765646688820147999862-0431002472178641134554--44555576343899984
Q gi|254781003|r 243 SRCNANKNLRNKIPIDYFVMDQ-NAYKFLIQESFSEILYNEDDIK--SRGKRLSDHCPISIDYD 303 (304)
Q Consensus 243 ~~~~~~~~~~~~~~iD~I~~s~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~SDH~PV~~~l~ 303 (304)
T Consensus 217 dTTv---~-~t~caYDriv~~g~~~~~~~~~gsa~v~~F~~~~~Lt~~~Al~VSDH~PVev~Lk 276 (276)
T smart00476 217 DTTV---T-STHCAYDRIVVAGERLRSSVVPGSAAVFDFQTAYGLTEEEALAISDHFPVEVTLK 276 (276)
T ss_pred CCCC---C-CCCCCCCEEEEECHHHHHCCCCCCCEEEECHHHHCCCHHHHHHCCCCCCEEEEEC
T ss_conf 7643---6-8887761499975455423136874267437864959999974677776699949