HHsearch results for GI: 254781003 and protein with PDBid: 1ako_A
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli K12} SCOP: d.151.1.1
Probab=99.94 E-value=1.2e-24 Score=151.64 Aligned_cols=233 Identities=16% Similarity=0.143 Sum_probs=112.2
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHH--HHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 6999983014788667666776531018899999999986089889999507857--99986033343078621455675
Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYN--AVAKVFPKNTWCIFYSTERLINH 101 (304)
Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 101 (304)
+||+||||+++. ++.+.+.++|++.+||||||||+.... .....+...+|.+.+.....
T Consensus 1 Mki~s~NvnGir----------------~r~~~i~~~i~~~~~DIi~LQE~k~~~~~~~~~~~~~~gy~~~~~~~~~--- 61 (268)
T 1ako_A 1 MKFVSFNINGLR----------------ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKG--- 61 (268)
T ss_dssp CEEEEEECSCGG----------------GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEETT---
T ss_pred CEEEEEEHHHHH----------------HHHHHHHHHHHHCCCCEEEEEECCCCCHHCCHHHHHHCCCEEEECCCCC---
T ss_conf 989999723188----------------7598899999878998999983328900189888975596464247546---
Q ss_pred CCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 43223446315899825852676530122467655555565336999998299499999940678887752000025778
Q gi|254781003|r 102 SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSC 181 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~ 181 (304)
....+. .....+......... ....................+.++++|...+....... ..
T Consensus 62 -------~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 122 (268)
T 1ako_A 62 -------HYGVAL-LTKETPIAVRRGFPG------DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPI---KF-- 122 (268)
T ss_dssp -------EEEEEE-EESSCCSEEEESSTT------CCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTT---HH--
T ss_pred -------CCCCEE-EECCCCHHHCCCCCC------CCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCHHH---HH--
T ss_conf -------666226-512352331048763------33222231011000123587788876416886422002---13--
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH----------------------HHHHHHHCCCCCCCCCCC
Q ss_conf 9999999999999863036898099980268887766204----------------------689875225575311144
Q gi|254781003|r 182 SLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNN----------------------DDFWKTIDPNDSLIRFPK 239 (304)
Q Consensus 182 ~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~ 239 (304)
.........+...+......+.++|++||||..+...... ..+...+.. .+.+...
T Consensus 123 ~~k~~~~~~~~~~~~~~~~~~~~~il~GdfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~D~~r 200 (268)
T 1ako_A 123 PAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSW--GLVDTFR 200 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHT--TEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCHHHCCHHHCCCCCCCCCHHHHHHHHHHHHC--CCEEEHH
T ss_conf 78999999999999998737997686345234841765337354011210257656687899999999748--9787714
Q ss_pred CC---CCCCCCCCCC-------CCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 56---7876564668-------8820147999862043100247217864113455444555576343899984
Q gi|254781003|r 240 EK---DSRCNANKNL-------RNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 240 ~~---~~~~~~~~~~-------~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
.. ..+..+++.. ....||||||+|+++........ +. ........+|||+||+++|-
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyil~S~~l~~~~~~~~--i~-----~~~~~~~~~SDH~PV~~~~r 267 (268)
T 1ako_A 201 HANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETG--ID-----YEIRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp HHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTTEEEEE--EC-----HHHHTSSSCCSBCCEEEEEC
T ss_pred HHCCCCCCCCEECCCCCCCCCCCCCEEEEEEEECHHHHHHHEEEE--EE-----HHHCCCCCCCCCCCEEEEEE
T ss_conf 326887875200467677644798678579997879973412888--75-----66418999998544799997