HHsearch results for GI: 254781003 and protein with PDBid: 1ako_A

>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli K12} SCOP: d.151.1.1
Probab=99.94  E-value=1.2e-24  Score=151.64  Aligned_cols=233  Identities=16%  Similarity=0.143  Sum_probs=112.2

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHH--HHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             6999983014788667666776531018899999999986089889999507857--99986033343078621455675
Q gi|254781003|r   24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYN--AVAKVFPKNTWCIFYSTERLINH  101 (304)
Q Consensus        24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~--~~~~~~~~~~~~~~~~~~~~~~~  101 (304)
                      +||+||||+++.                ++.+.+.++|++.+||||||||+....  .....+...+|.+.+.....   
T Consensus         1 Mki~s~NvnGir----------------~r~~~i~~~i~~~~~DIi~LQE~k~~~~~~~~~~~~~~gy~~~~~~~~~---   61 (268)
T 1ako_A            1 MKFVSFNINGLR----------------ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKG---   61 (268)
T ss_dssp             CEEEEEECSCGG----------------GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEETT---
T ss_pred             CEEEEEEHHHHH----------------HHHHHHHHHHHHCCCCEEEEEECCCCCHHCCHHHHHHCCCEEEECCCCC---
T ss_conf             989999723188----------------7598899999878998999983328900189888975596464247546---


Q ss_pred             CCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf             43223446315899825852676530122467655555565336999998299499999940678887752000025778
Q gi|254781003|r  102 SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSC  181 (304)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~  181 (304)
                             ....+. .....+.........      ....................+.++++|...+.......   ..  
T Consensus        62 -------~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--  122 (268)
T 1ako_A           62 -------HYGVAL-LTKETPIAVRRGFPG------DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPI---KF--  122 (268)
T ss_dssp             -------EEEEEE-EESSCCSEEEESSTT------CCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTT---HH--
T ss_pred             -------CCCCEE-EECCCCHHHCCCCCC------CCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCHHH---HH--
T ss_conf             -------666226-512352331048763------33222231011000123587788876416886422002---13--


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH----------------------HHHHHHHCCCCCCCCCCC
Q ss_conf             9999999999999863036898099980268887766204----------------------689875225575311144
Q gi|254781003|r  182 SLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNN----------------------DDFWKTIDPNDSLIRFPK  239 (304)
Q Consensus       182 ~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~  239 (304)
                      .........+...+......+.++|++||||..+......                      ..+...+..  .+.+...
T Consensus       123 ~~k~~~~~~~~~~~~~~~~~~~~~il~GdfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~D~~r  200 (268)
T 1ako_A          123 PAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSW--GLVDTFR  200 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHT--TEEEHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCHHHCCHHHCCCCCCCCCHHHHHHHHHHHHC--CCEEEHH
T ss_conf             78999999999999998737997686345234841765337354011210257656687899999999748--9787714


Q ss_pred             CC---CCCCCCCCCC-------CCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             56---7876564668-------8820147999862043100247217864113455444555576343899984
Q gi|254781003|r  240 EK---DSRCNANKNL-------RNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD  303 (304)
Q Consensus       240 ~~---~~~~~~~~~~-------~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~  303 (304)
                      ..   ..+..+++..       ....||||||+|+++........  +.     ........+|||+||+++|-
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyil~S~~l~~~~~~~~--i~-----~~~~~~~~~SDH~PV~~~~r  267 (268)
T 1ako_A          201 HANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETG--ID-----YEIRSMEKPSDHAPVWATFR  267 (268)
T ss_dssp             HHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTTEEEEE--EC-----HHHHTSSSCCSBCCEEEEEC
T ss_pred             HHCCCCCCCCEECCCCCCCCCCCCCEEEEEEEECHHHHHHHEEEE--EE-----HHHCCCCCCCCCCCEEEEEE
T ss_conf             326887875200467677644798678579997879973412888--75-----66418999998544799997