HHsearch results for GI: 254781003 and protein with PDBid: 1wdu_A

>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.95  E-value=2.2e-25  Score=155.61  Aligned_cols=223  Identities=16%  Similarity=0.111  Sum_probs=116.5

Q ss_pred             CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             67882699998301478866766677653101889999999998608988999950785799986033343078621455
Q gi|254781003|r   19 SVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERL   98 (304)
Q Consensus        19 ~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~   98 (304)
                      +...+|||+|||++.                ...+.+.+.+.+.+.+||||||||+...... .......+..+..... 
T Consensus        15 ~~g~~~rvl~~Nv~~----------------~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~~-~~~~~~~~~~~~~~~~-   76 (245)
T 1wdu_A           15 KNGPPYRVLQANLQR----------------KKLATAELAIEAATRKAAIALIQEPYVGGAK-SMKGFRGVRVFQSTAQ-   76 (245)
T ss_dssp             ---CCEEEEEEECTT----------------CHHHHHHHHHHHHHHTCSEEEEESCCC-------CCCSSCEEEECCCC-
T ss_pred             CCCCCEEEEEECCCC----------------CHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-CCHHCCCCEEEEEECC-
T ss_conf             999987999220499----------------7567999999998629988999869867665-1010455314774456-


Q ss_pred             CCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf             67543223446315899825852676530122467655555565336999998299499999940678887752000025
Q gi|254781003|r   99 INHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYS  178 (304)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~  178 (304)
                             .....+.++.++.+.......  +.         ........+.+..++..+.++++|+++....+       
T Consensus        77 -------~~~~~g~ai~~~~~~~~~~~~--~~---------~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~~-------  131 (245)
T 1wdu_A           77 -------GDGTVKAAIAVFDHDLDVIQY--PQ---------LTTNNIVVVGIRTRAWEITLVSYYFEPDKPIE-------  131 (245)
T ss_dssp             -------TTCCCCEEEEECCSSCEEEEC--TT---------TCCSSEEEEEEECSSCEEEEEEEECCTTSCSH-------
T ss_pred             -------CCCCCEEEEEEECCCCCCEEE--CC---------CCCCCEEEEEEEECCEEEEEEEEECCCCCCHH-------
T ss_conf             -------799848999994676552130--37---------79899689999928932999999669996278-------


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCH------HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             778999999999999986303689809998026888776620------46898752255753111445678765646688
Q gi|254781003|r  179 PSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGN------NDDFWKTIDPNDSLIRFPKEKDSRCNANKNLR  252 (304)
Q Consensus       179 ~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (304)
                          ....+   +...+..  ..+.++|+|||||.....-..      ................................
T Consensus       132 ----~~~~~---l~~~~~~--~~~~~~Il~GDfN~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~  202 (245)
T 1wdu_A          132 ----SYLEQ---IKRVERK--MGPKRLIFGGDANAKSTWWGSKEDDARGDQLMGTLGELGLHILNEGDVPTFDTIRGGKR  202 (245)
T ss_dssp             ----HHHHH---HHHHHHT--TCSSSEEEEEECCCCCGGGTCSSCCHHHHHHHHHHHHHTCEECCCSCCCSEEC-----C
T ss_pred             ----HHHHH---HHHHHHH--CCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC
T ss_conf             ----99999---9998875--47964999734353654446653100012333344432222246532101202468888


Q ss_pred             CCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             8201479998620431002472178641134554445555763438999849
Q gi|254781003|r  253 NKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF  304 (304)
Q Consensus       253 ~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f  304 (304)
                      .+.||||||+|+++.......  .+       .  .....|||+||.++|..
T Consensus       203 ~~~rID~i~~s~~l~~~~~~~--~v-------~--~~~~~SDH~pv~~~l~l  243 (245)
T 1wdu_A          203 YQSRVDVTFCTEDMLDLIDGW--RV-------D--EDLVSSDHNGMVFNIRL  243 (245)
T ss_dssp             CEECCEEEEECGGGBTTEEEE--EE-------C--TTSSSSSBCCEEEEECC
T ss_pred             CCCCEEEEEECCHHHHHCEEE--EE-------C--CCCCCCCCCEEEEEEEE
T ss_conf             896248999893686214699--99-------8--99999998108999997