HHsearch results for GI: 254781003 and protein with PDBid: 1wdu_A
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.95 E-value=2.2e-25 Score=155.61 Aligned_cols=223 Identities=16% Similarity=0.111 Sum_probs=116.5
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 67882699998301478866766677653101889999999998608988999950785799986033343078621455
Q gi|254781003|r 19 SVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERL 98 (304)
Q Consensus 19 ~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~ 98 (304)
+...+|||+|||++. ...+.+.+.+.+.+.+||||||||+...... .......+..+.....
T Consensus 15 ~~g~~~rvl~~Nv~~----------------~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~~-~~~~~~~~~~~~~~~~- 76 (245)
T 1wdu_A 15 KNGPPYRVLQANLQR----------------KKLATAELAIEAATRKAAIALIQEPYVGGAK-SMKGFRGVRVFQSTAQ- 76 (245)
T ss_dssp ---CCEEEEEEECTT----------------CHHHHHHHHHHHHHHTCSEEEEESCCC-------CCCSSCEEEECCCC-
T ss_pred CCCCCEEEEEECCCC----------------CHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-CCHHCCCCEEEEEECC-
T ss_conf 999987999220499----------------7567999999998629988999869867665-1010455314774456-
Q ss_pred CCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 67543223446315899825852676530122467655555565336999998299499999940678887752000025
Q gi|254781003|r 99 INHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYS 178 (304)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~ 178 (304)
.....+.++.++.+....... +. ........+.+..++..+.++++|+++....+
T Consensus 77 -------~~~~~g~ai~~~~~~~~~~~~--~~---------~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~~------- 131 (245)
T 1wdu_A 77 -------GDGTVKAAIAVFDHDLDVIQY--PQ---------LTTNNIVVVGIRTRAWEITLVSYYFEPDKPIE------- 131 (245)
T ss_dssp -------TTCCCCEEEEECCSSCEEEEC--TT---------TCCSSEEEEEEECSSCEEEEEEEECCTTSCSH-------
T ss_pred -------CCCCCEEEEEEECCCCCCEEE--CC---------CCCCCEEEEEEEECCEEEEEEEEECCCCCCHH-------
T ss_conf -------799848999994676552130--37---------79899689999928932999999669996278-------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCH------HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 778999999999999986303689809998026888776620------46898752255753111445678765646688
Q gi|254781003|r 179 PSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGN------NDDFWKTIDPNDSLIRFPKEKDSRCNANKNLR 252 (304)
Q Consensus 179 ~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (304)
....+ +...+.. ..+.++|+|||||.....-.. ................................
T Consensus 132 ----~~~~~---l~~~~~~--~~~~~~Il~GDfN~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 202 (245)
T 1wdu_A 132 ----SYLEQ---IKRVERK--MGPKRLIFGGDANAKSTWWGSKEDDARGDQLMGTLGELGLHILNEGDVPTFDTIRGGKR 202 (245)
T ss_dssp ----HHHHH---HHHHHHT--TCSSSEEEEEECCCCCGGGTCSSCCHHHHHHHHHHHHHTCEECCCSCCCSEEC-----C
T ss_pred ----HHHHH---HHHHHHH--CCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC
T ss_conf ----99999---9998875--47964999734353654446653100012333344432222246532101202468888
Q ss_pred CCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 8201479998620431002472178641134554445555763438999849
Q gi|254781003|r 253 NKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 (304)
Q Consensus 253 ~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304)
.+.||||||+|+++....... .+ . .....|||+||.++|..
T Consensus 203 ~~~rID~i~~s~~l~~~~~~~--~v-------~--~~~~~SDH~pv~~~l~l 243 (245)
T 1wdu_A 203 YQSRVDVTFCTEDMLDLIDGW--RV-------D--EDLVSSDHNGMVFNIRL 243 (245)
T ss_dssp CEECCEEEEECGGGBTTEEEE--EE-------C--TTSSSSSBCCEEEEECC
T ss_pred CCCCEEEEEECCHHHHHCEEE--EE-------C--CCCCCCCCCEEEEEEEE
T ss_conf 896248999893686214699--99-------8--99999998108999997