HHsearch results for GI: 254781003 and protein with PDBid: 2f1n_A
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.94 E-value=2.4e-26 Score=160.82 Aligned_cols=239 Identities=15% Similarity=0.059 Sum_probs=104.9
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEEEEECCCHHHHHHHHC----CCC--C
Q ss_conf 8767882699998301478866766677653101889999999998-60898899995078579998603----334--3
Q gi|254781003|r 17 TASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAK-NLDADIVFLQEMGSYNAVAKVFP----KNT--W 89 (304)
Q Consensus 17 ~~~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~~~DIi~lQEv~~~~~~~~~~~----~~~--~ 89 (304)
-++..++|||+||||+++.... ..++. ..+.+.+. ..+|||||||||.+......... ... +
T Consensus 9 ~g~~~~~lri~TwNv~~~~~~~--------~~~~~---~~~~~~i~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~ 77 (262)
T 2f1n_A 9 VGTDLTDFRVATWNLQGASATT--------ESKWN---INVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPV 77 (262)
T ss_dssp -CCCGGGCCEEEEEEEECTTSC--------HHHHH---THHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCC
T ss_pred CCCCCCCCEEEEECCCCCCCCC--------CCCHH---HHHHHHHHHCCCCCEEEEECCCCHHCCCHHHHHHHHCCCCCH
T ss_conf 0379876299998489677876--------55358---999999973789899999747861023056665540246524
Q ss_pred EEEEECCCCC-CCCCCC------CCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEE
Q ss_conf 0786214556-754322------344631589982585267653012246765555556533699999829949999994
Q gi|254781003|r 90 CIFYSTERLI-NHSKRD------SNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDI 162 (304)
Q Consensus 90 ~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~ 162 (304)
..+....... ...... .......|.++.++.+.......... ....+....+. ...+.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ilsk~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~~~~~~ 146 (262)
T 2f1n_A 78 RELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLSPV-------RQGGRPLLGIR----IGNDAFFTA 146 (262)
T ss_dssp EEEEEECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEEEEECCS-------STTCCCEEEEE----ETTEEEEEE
T ss_pred HHHHHCCCCCCCCCEEEEEEECCCCCCCEECCEEEECCCCCCCEECCCC-------CCCCCEEEEEE----ECCCEEEEE
T ss_conf 5543111112477247898631344463412289976561003220787-------65674357887----177269999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 06788877520000257789999999999999863036898099980268887766204689875225575311144567
Q gi|254781003|r 163 HLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKD 242 (304)
Q Consensus 163 Hl~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (304)
|+.+....+... ...++..+..........+.++|++||||..+....... ...+ ........
T Consensus 147 Hl~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~~~~--~~~~------~~~~~~~~ 209 (262)
T 2f1n_A 147 HAIAMRNNDAPA---------LVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNL--TVPV------RRASEIIS 209 (262)
T ss_dssp ECCSSSSCSHHH---------HHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHHHTTS--CHHH------HHTEEEEC
T ss_pred ECCCCCCCCHHH---------HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHH--HHHH------HHHHHHCC
T ss_conf 737888730899---------999999999999885367997573476465715677766--5343------33203128
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 876564668882014799986204310024721786411345544455557634389998
Q gi|254781003|r 243 SRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302 (304)
Q Consensus 243 ~~~~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l 302 (304)
.+ ..++....||||||++++............ .........+|||+||.+.|
T Consensus 210 ~~---~~t~~~~~riD~i~~s~~~~~~~~~~~~~~-----~~~~~~~~~~SDH~PV~~~~ 261 (262)
T 2f1n_A 210 PA---AATQTSQRTLDYAVAGNSVAFRPSPLQAGI-----VYGARRTQISSDHFPVGVSR 261 (262)
T ss_dssp CS---SCSBTTSCCCEEEEEEESSCCCCCCCEEEE-----TTTTSCCCCSCSBCCEEEEC
T ss_pred CC---CCCCCCCCEEEEEEECCCHHCCCCEEEEEE-----EECCCCCCCCCCCHHEEEEE
T ss_conf 99---875799982999998081653521368998-----50335899648854238984