HHsearch results for GI: 254781003 and protein with PDBid: 2f1n_A

>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.94  E-value=2.4e-26  Score=160.82  Aligned_cols=239  Identities=15%  Similarity=0.059  Sum_probs=104.9

Q ss_pred             CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEEEEECCCHHHHHHHHC----CCC--C
Q ss_conf             8767882699998301478866766677653101889999999998-60898899995078579998603----334--3
Q gi|254781003|r   17 TASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAK-NLDADIVFLQEMGSYNAVAKVFP----KNT--W   89 (304)
Q Consensus        17 ~~~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~~~DIi~lQEv~~~~~~~~~~~----~~~--~   89 (304)
                      -++..++|||+||||+++....        ..++.   ..+.+.+. ..+|||||||||.+.........    ...  +
T Consensus         9 ~g~~~~~lri~TwNv~~~~~~~--------~~~~~---~~~~~~i~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~   77 (262)
T 2f1n_A            9 VGTDLTDFRVATWNLQGASATT--------ESKWN---INVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPV   77 (262)
T ss_dssp             -CCCGGGCCEEEEEEEECTTSC--------HHHHH---THHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCC
T ss_pred             CCCCCCCCEEEEECCCCCCCCC--------CCCHH---HHHHHHHHHCCCCCEEEEECCCCHHCCCHHHHHHHHCCCCCH
T ss_conf             0379876299998489677876--------55358---999999973789899999747861023056665540246524


Q ss_pred             EEEEECCCCC-CCCCCC------CCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEE
Q ss_conf             0786214556-754322------344631589982585267653012246765555556533699999829949999994
Q gi|254781003|r   90 CIFYSTERLI-NHSKRD------SNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDI  162 (304)
Q Consensus        90 ~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~  162 (304)
                      ..+....... ......      .......|.++.++.+..........       ....+....+.    ...+.++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ilsk~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~~~~~~  146 (262)
T 2f1n_A           78 RELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLSPV-------RQGGRPLLGIR----IGNDAFFTA  146 (262)
T ss_dssp             EEEEEECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEEEEECCS-------STTCCCEEEEE----ETTEEEEEE
T ss_pred             HHHHHCCCCCCCCCEEEEEEECCCCCCCEECCEEEECCCCCCCEECCCC-------CCCCCEEEEEE----ECCCEEEEE
T ss_conf             5543111112477247898631344463412289976561003220787-------65674357887----177269999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             06788877520000257789999999999999863036898099980268887766204689875225575311144567
Q gi|254781003|r  163 HLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKD  242 (304)
Q Consensus       163 Hl~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (304)
                      |+.+....+...         ...++..+..........+.++|++||||..+.......  ...+      ........
T Consensus       147 Hl~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~~~~--~~~~------~~~~~~~~  209 (262)
T 2f1n_A          147 HAIAMRNNDAPA---------LVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNL--TVPV------RRASEIIS  209 (262)
T ss_dssp             ECCSSSSCSHHH---------HHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHHHTTS--CHHH------HHTEEEEC
T ss_pred             ECCCCCCCCHHH---------HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHH--HHHH------HHHHHHCC
T ss_conf             737888730899---------999999999999885367997573476465715677766--5343------33203128


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             876564668882014799986204310024721786411345544455557634389998
Q gi|254781003|r  243 SRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY  302 (304)
Q Consensus       243 ~~~~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l  302 (304)
                      .+   ..++....||||||++++............     .........+|||+||.+.|
T Consensus       210 ~~---~~t~~~~~riD~i~~s~~~~~~~~~~~~~~-----~~~~~~~~~~SDH~PV~~~~  261 (262)
T 2f1n_A          210 PA---AATQTSQRTLDYAVAGNSVAFRPSPLQAGI-----VYGARRTQISSDHFPVGVSR  261 (262)
T ss_dssp             CS---SCSBTTSCCCEEEEEEESSCCCCCCCEEEE-----TTTTSCCCCSCSBCCEEEEC
T ss_pred             CC---CCCCCCCCEEEEEEECCCHHCCCCEEEEEE-----EECCCCCCCCCCCHHEEEEE
T ss_conf             99---875799982999998081653521368998-----50335899648854238984