HHsearch results for GI: 254781003 and protein with PDBid: 2jc4_A
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.94 E-value=3.2e-24 Score=149.18 Aligned_cols=229 Identities=20% Similarity=0.203 Sum_probs=108.2
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 699998301478866766677653101889999999998608988999950785--799986033343078621455675
Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSY--NAVAKVFPKNTWCIFYSTERLINH 101 (304)
Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 101 (304)
||||||||+++ ..++++++++|+..+|||||||||... ......+...++........
T Consensus 1 mKi~T~Nvng~----------------r~r~~~~~~~i~~~~pDIv~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~---- 60 (256)
T 2jc4_A 1 MKITTWNVNSL----------------NVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQK---- 60 (256)
T ss_dssp CEEEEEECSCH----------------HHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEECCS----
T ss_pred CEEEEEEECCH----------------HHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCEEECCCC----
T ss_conf 98999981779----------------9999999999984899899998655580008978972126713541654----
Q ss_pred CCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 43223446315899825852676530122467655555565336999998299499999940678887752000025778
Q gi|254781003|r 102 SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSC 181 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~ 181 (304)
.....++................. . + ...+. ......+ ..++++|+.++...+.....
T Consensus 61 ------~~~~~~~~~~~~~~~~~~~~~~~~-~-~----~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~----- 118 (256)
T 2jc4_A 61 ------TYNGVAIVSRSVPQDVHFGLPALP-D-D----PQRRV---IAATVSG--VRVINVYCVNGEALDSPKFK----- 118 (256)
T ss_dssp ------SSCCEEEEESSCCEEEEESCTTST-T-C----CSCCE---EEEEETT--EEEEEEECCCCCSTTSHHHH-----
T ss_pred ------CCCCCEEEEEECCCCCCCCCCCCC-C-C----CCCEE---EEEECCC--EEEEEEECCCCCCCCHHHHH-----
T ss_conf ------555732788406641112468887-7-7----55159---9985087--79999975699876427799-----
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH----------------HHHHHHHCCCCCCCCCC----CCC
Q ss_conf 9999999999999863036898099980268887766204----------------68987522557531114----456
Q gi|254781003|r 182 SLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNN----------------DDFWKTIDPNDSLIRFP----KEK 241 (304)
Q Consensus 182 ~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~----------------~~~~~~~~~~~~~~~~~----~~~ 241 (304)
.+......+..........+.+++++||||......... ......+.. ...+.. ...
T Consensus 119 -~~~~~~~~~~~~~~~~~~~~~~~~~~gd~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~~~~~~~~~ 195 (256)
T 2jc4_A 119 -YKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNLLDL--GLTDSLRQVHPEG 195 (256)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGGTTCTTSCHHHHHHHHHHHTT--TCEEHHHHHCCSS
T ss_pred -HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCHHHHCCCCCCCHHHHHHHHHHHHC--CCEEEEEEECCCC
T ss_conf -9999999999888876224887430343235864877607343014545898999988754315--7389887613898
Q ss_pred CCCCCCCCCCCC-----CCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 787656466888-----201479998620431002472178641134554445555763438999849
Q gi|254781003|r 242 DSRCNANKNLRN-----KIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 (304)
Q Consensus 242 ~~~~~~~~~~~~-----~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304)
...++....... ..||||||+|+++........+ .........+|||+||+++|+|
T Consensus 196 ~~~~~~~~~~~~~~~~~g~RIDyI~~S~~l~~~v~~~~v-------~~~~~~~~~~SDH~PV~~~l~~ 256 (256)
T 2jc4_A 196 AFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRV-------DLETRALERPSDHAPVTAEFDW 256 (256)
T ss_dssp CCCCBCCTTTTHHHHTCCBCCEEEEECHHHHTTEEEEEE-------CHHHHTSSSCCSBCCEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHCEEEEE-------EECCCCCCCCCCCCCEEEEEEC
T ss_conf 763257876772416885466899968599733269999-------7312479999982268999969