HHsearch results for GI: 254781003 and protein with PDBid: 2o3h_A
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.92 E-value=2.7e-23 Score=144.18 Aligned_cols=231 Identities=14% Similarity=0.098 Sum_probs=99.7
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHCCCCCEEEEECCCC
Q ss_conf 882699998301478866766677653101889999999998608988999950785--799986033343078621455
Q gi|254781003|r 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSY--NAVAKVFPKNTWCIFYSTERL 98 (304)
Q Consensus 21 ~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~--~~~~~~~~~~~~~~~~~~~~~ 98 (304)
+.+|||+||||+++. . ...+.+.++|++.+|||||||||... .....+....+|.........
T Consensus 26 ~~~mkiiSwNvnGlr--------------~-~~~~~~~~~l~~~~pDIi~LQE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (285)
T 2o3h_A 26 PATLKIASWNVDGLR--------------A-WIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPS 90 (285)
T ss_dssp BCCEEEEEEECSSHH--------------H-HHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECBC
T ss_pred CCCEEEEEEECCCHH--------------H-HHHCCHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHCCCCCEEEEECCC
T ss_conf 996799999817877--------------7-3233589999757997999997547811188868615787445541135
Q ss_pred CCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 67543223446315899825852676530122467655555565336999998299499999940678887752000025
Q gi|254781003|r 99 INHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYS 178 (304)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~ 178 (304)
. ......+..+.+..+............. ... ........+..+..++++......... ..
T Consensus 91 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~- 151 (285)
T 2o3h_A 91 D-------KEGYSGVGLLSRQCPLKVSYGIGDEEHD-------QEG-RVIVAEFDSFVLVTAYVPNAGRGLVRL---EY- 151 (285)
T ss_dssp ---------CCSCCEEEEESSCCSEEEESCSCGGGS-------SBC-CEEEEECSSCEEEEEECCCCCGGGTTH---HH-
T ss_pred C-------CCCCCCCCCCCCCCCEEEEECCCCCCCC-------CCC-EEEEEEECCEEEEEEEECCCCCCCCCH---HH-
T ss_conf 5-------6654431232466860566357877444-------332-189998354499999704677752006---78-
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCH----------------HHHHHHHHCCCCCCCCCC----
Q ss_conf 778999999999999986303689809998026888776620----------------468987522557531114----
Q gi|254781003|r 179 PSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGN----------------NDDFWKTIDPNDSLIRFP---- 238 (304)
Q Consensus 179 ~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~----------------~~~~~~~~~~~~~~~~~~---- 238 (304)
. .+..............+.+++++||||........ ...+...+... ++....
T Consensus 152 -----~-~~~~~~~~~~~~~~~~~~~~i~~gd~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~d~~r~~~ 224 (285)
T 2o3h_A 152 -----R-QRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAV-PLADSFRHLY 224 (285)
T ss_dssp -----H-HHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHHHHHHHHHHHHT-TCEEHHHHHC
T ss_pred -----H-HHHHHHHHHHHHHHCCCCEEEEECCHHCCCCHHHCCCHHHHHHCCCCCCHHHHHHHHHHHCC-CCCCCEEEEC
T ss_conf -----8-87756665544430465438970511128624320476764200246838888899997414-7544202424
Q ss_pred -CCCCC-CCCCCCC----CCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf -45678-7656466----88820147999862043100247217864113455444555576343899984
Q gi|254781003|r 239 -KEKDS-RCNANKN----LRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 239 -~~~~~-~~~~~~~----~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
..... +++.+.. .....||||||+|+++..+.... .+ .....+|||+||+++|+
T Consensus 225 p~~~~~yT~~s~~~~~~~~~~g~RID~Il~S~~l~~~v~~~--~v---------~~~~~~SDH~PV~v~L~ 284 (285)
T 2o3h_A 225 PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDS--KI---------RSKALGSDHCPITLYLA 284 (285)
T ss_dssp TTCCSCCSBCCSSTTHHHHTCCBCCEEEEECGGGGGGEEEE--EE---------CTTCCSSSBCCEEEEEC
T ss_pred CCCCCCEEEECCCCCCCCCCCCEEEEEEEECHHHHHHCEEE--EE---------CCCCCCCCCCCEEEEEE
T ss_conf 89998267545878845279966768999783897131078--98---------78999998326899997