HHsearch results for GI: 254781003 and protein with PDBid: 2o3h_A

>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.92  E-value=2.7e-23  Score=144.18  Aligned_cols=231  Identities=14%  Similarity=0.098  Sum_probs=99.7

Q ss_pred             CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHCCCCCEEEEECCCC
Q ss_conf             882699998301478866766677653101889999999998608988999950785--799986033343078621455
Q gi|254781003|r   21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSY--NAVAKVFPKNTWCIFYSTERL   98 (304)
Q Consensus        21 ~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~--~~~~~~~~~~~~~~~~~~~~~   98 (304)
                      +.+|||+||||+++.              . ...+.+.++|++.+|||||||||...  .....+....+|.........
T Consensus        26 ~~~mkiiSwNvnGlr--------------~-~~~~~~~~~l~~~~pDIi~LQE~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (285)
T 2o3h_A           26 PATLKIASWNVDGLR--------------A-WIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPS   90 (285)
T ss_dssp             BCCEEEEEEECSSHH--------------H-HHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECBC
T ss_pred             CCCEEEEEEECCCHH--------------H-HHHCCHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHCCCCCEEEEECCC
T ss_conf             996799999817877--------------7-3233589999757997999997547811188868615787445541135


Q ss_pred             CCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf             67543223446315899825852676530122467655555565336999998299499999940678887752000025
Q gi|254781003|r   99 INHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYS  178 (304)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~  178 (304)
                      .       ......+..+.+..+.............       ... ........+..+..++++.........   .. 
T Consensus        91 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-  151 (285)
T 2o3h_A           91 D-------KEGYSGVGLLSRQCPLKVSYGIGDEEHD-------QEG-RVIVAEFDSFVLVTAYVPNAGRGLVRL---EY-  151 (285)
T ss_dssp             ---------CCSCCEEEEESSCCSEEEESCSCGGGS-------SBC-CEEEEECSSCEEEEEECCCCCGGGTTH---HH-
T ss_pred             C-------CCCCCCCCCCCCCCCEEEEECCCCCCCC-------CCC-EEEEEEECCEEEEEEEECCCCCCCCCH---HH-
T ss_conf             5-------6654431232466860566357877444-------332-189998354499999704677752006---78-


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCH----------------HHHHHHHHCCCCCCCCCC----
Q ss_conf             778999999999999986303689809998026888776620----------------468987522557531114----
Q gi|254781003|r  179 PSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGN----------------NDDFWKTIDPNDSLIRFP----  238 (304)
Q Consensus       179 ~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~----------------~~~~~~~~~~~~~~~~~~----  238 (304)
                           . .+..............+.+++++||||........                ...+...+... ++....    
T Consensus       152 -----~-~~~~~~~~~~~~~~~~~~~~i~~gd~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~d~~r~~~  224 (285)
T 2o3h_A          152 -----R-QRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAV-PLADSFRHLY  224 (285)
T ss_dssp             -----H-HHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHHHHHHHHHHHHT-TCEEHHHHHC
T ss_pred             -----H-HHHHHHHHHHHHHHCCCCEEEEECCHHCCCCHHHCCCHHHHHHCCCCCCHHHHHHHHHHHCC-CCCCCEEEEC
T ss_conf             -----8-87756665544430465438970511128624320476764200246838888899997414-7544202424


Q ss_pred             -CCCCC-CCCCCCC----CCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             -45678-7656466----88820147999862043100247217864113455444555576343899984
Q gi|254781003|r  239 -KEKDS-RCNANKN----LRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD  303 (304)
Q Consensus       239 -~~~~~-~~~~~~~----~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~  303 (304)
                       ..... +++.+..    .....||||||+|+++..+....  .+         .....+|||+||+++|+
T Consensus       225 p~~~~~yT~~s~~~~~~~~~~g~RID~Il~S~~l~~~v~~~--~v---------~~~~~~SDH~PV~v~L~  284 (285)
T 2o3h_A          225 PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDS--KI---------RSKALGSDHCPITLYLA  284 (285)
T ss_dssp             TTCCSCCSBCCSSTTHHHHTCCBCCEEEEECGGGGGGEEEE--EE---------CTTCCSSSBCCEEEEEC
T ss_pred             CCCCCCEEEECCCCCCCCCCCCEEEEEEEECHHHHHHCEEE--EE---------CCCCCCCCCCCEEEEEE
T ss_conf             89998267545878845279966768999783897131078--98---------78999998326899997