HHsearch results for GI: 254781003 and protein with PDBid: 3ngq_A
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=100.00 E-value=1.6e-32 Score=194.53 Aligned_cols=273 Identities=12% Similarity=0.054 Sum_probs=134.7
Q ss_pred CCEEEEEEEC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHH---HHHHHCCCCCEEEEECC
Q ss_conf 8269999830--147886676667765310188999999999860898899995078579---99860333430786214
Q gi|254781003|r 22 QKVRLVSWNI--NTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNA---VAKVFPKNTWCIFYSTE 96 (304)
Q Consensus 22 ~~lrV~twNi--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~---~~~~~~~~~~~~~~~~~ 96 (304)
.+|||||||| +.+.........+.....++.+.+.|++.|.+.+|||||||||++... +...+...+|...+...
T Consensus 30 ~~lrV~SyNVL~~~~~~~~~~~~~~~~~l~~~~R~~~I~~~I~~~~pDII~LQEV~~~~~~~~l~~~l~~~g~~~~~~~~ 109 (398)
T 3ngq_A 30 ASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPK 109 (398)
T ss_dssp EEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEES
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 81899966857655677333689981664999999999999986699889997476532369999999862983587624
Q ss_pred CCC-CCCCCCCCCCCEEEEEEECCCEEEEE-EECCCCC--------CCCCCCC-----------------CCCCEEEEEE
Q ss_conf 556-75432234463158998258526765-3012246--------7655555-----------------5653369999
Q gi|254781003|r 97 RLI-NHSKRDSNNDIHTAIAVRKKNVRVLQ-QSYPLLG--------AKDSFSR-----------------AGNRRAVELL 149 (304)
Q Consensus 97 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~-----------------~~~r~~~~~~ 149 (304)
... ...........+++++++.+...+.. ..+.+.. ......+ ..........
T Consensus 110 ~~~~~~~~~~~~~~~gvai~~~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (398)
T 3ngq_A 110 SRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPI 189 (398)
T ss_dssp CTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTCCCEEEEEEEEECGGGC-------
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEE
T ss_conf 67654456777666307999866766256677886167666666553001101001332103566411354222102210
Q ss_pred EEECCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------------CCCCCCCEEEEECCCCCCC
Q ss_conf 982994999999406788877520000257789999999999999863-------------0368980999802688877
Q gi|254781003|r 150 VEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQ-------------KKESLVPFVIAGDFNRKIN 216 (304)
Q Consensus 150 ~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~-------------~~~~~~~vIi~GDfN~~~~ 216 (304)
....+..+.++|+||.+...... .+..|++.+.+++.. ....+.++|+|||||..+.
T Consensus 190 ~~~~~~~~~v~ntHL~~~~~~~~----------~r~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~~ 259 (398)
T 3ngq_A 190 HAADKQLLIVANAHMHWDPEYSD----------VKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPD 259 (398)
T ss_dssp ----CCEEEEEEEECCCCTTCHH----------HHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTT
T ss_pred CCCCCCEEEEEEECCCCCCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCC
T ss_conf 15788569999966555665307----------89999999999999999876653201234456874487145467876
Q ss_pred CCCHHHHHHHHHCCCCC-------------CC-----------------C-CCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 66204689875225575-------------31-----------------1-14456787656466888201479998620
Q gi|254781003|r 217 YLGNNDDFWKTIDPNDS-------------LI-----------------R-FPKEKDSRCNANKNLRNKIPIDYFVMDQN 265 (304)
Q Consensus 217 ~~~~~~~~~~~~~~~~~-------------~~-----------------~-~~~~~~~~~~~~~~~~~~~~iD~I~~s~~ 265 (304)
...........+..... .. . ..........+........||||||+|++
T Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~riDyI~~s~~ 339 (398)
T 3ngq_A 260 SGVVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYTNYTFDFKGVIDYIFYSKT 339 (398)
T ss_dssp SHHHHHHHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEEETTTTTSSSCSEECSSCEECCEEEEEETT
T ss_pred CHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECC
T ss_conf 47899987089774310344403444444456554334466444567655433457878752024998953889997376
Q ss_pred HHHCCCCCCEEEEE---ECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 43100247217864---1134554445555763438999849
Q gi|254781003|r 266 AYKFLIQESFSEIL---YNEDDIKSRGKRLSDHCPISIDYDF 304 (304)
Q Consensus 266 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304)
.............. .......+...++|||+||+++|+|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~SDH~pV~a~~~l 381 (398)
T 3ngq_A 340 HMNVEGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLEL 381 (398)
T ss_dssp TEEEEEEECCCCHHHHHHTTCCSSCBTTBCSSBCCEEEEEEE
T ss_pred CCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCHHEEEEEEE
T ss_conf 463444205677787120002577788998851407999997