Query gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 304
No_of_seqs 132 out of 2576
Neff 11.2
Searched_HMMs 23785
Date Tue May 31 23:35:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781003.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i41_A Beta-hemolysin; beta to 100.0 1.2E-34 5.1E-39 206.1 23.9 272 19-302 25-316 (317)
2 1zwx_A SMCL, sphingomyelinase- 100.0 6.9E-34 2.9E-38 202.0 24.8 273 16-300 3-296 (301)
3 2ddr_A Sphingomyelin phosphodi 100.0 1.4E-33 6E-38 200.3 24.0 278 16-304 2-305 (306)
4 3ngq_A CCR4-NOT transcription 100.0 1.6E-32 6.8E-37 194.5 19.3 273 22-304 30-381 (398)
5 3mpr_A Putative endonuclease/e 100.0 1.6E-31 6.5E-36 189.2 18.5 261 18-304 1-289 (298)
6 3l1w_A Uncharacterized protein 100.0 4.8E-30 2E-34 181.0 20.0 242 24-304 1-251 (257)
7 2j63_A AP-endonuclease; base e 100.0 2.5E-29 1.1E-33 177.1 18.6 251 22-304 148-466 (467)
8 2a40_B Deoxyribonuclease-1; WA 100.0 3.1E-29 1.3E-33 176.6 17.3 246 24-303 1-260 (260)
9 3g6s_A Putative endonuclease/e 100.0 7.7E-28 3.2E-32 169.0 18.7 246 22-303 2-259 (267)
10 1wdu_A TRAS1 ORF2P; four-layer 99.9 2.2E-25 9.1E-30 155.6 22.0 223 19-304 15-243 (245)
11 1vyb_A ORF2 contains A reverse 99.9 1.5E-25 6.3E-30 156.5 20.5 222 20-303 4-238 (238)
12 2jc4_A Exodeoxyribonuclease II 99.9 3.2E-24 1.4E-28 149.2 23.1 229 24-304 1-256 (256)
13 1ako_A Exonuclease III; AP-end 99.9 1.2E-24 4.8E-29 151.6 20.0 233 24-303 1-267 (268)
14 2f1n_A CDT B, cytolethal diste 99.9 2.4E-26 1E-30 160.8 11.1 239 17-302 9-261 (262)
15 1sr4_B CDT B, cytolethal diste 99.9 2E-25 8.4E-30 155.8 13.6 246 21-303 2-260 (261)
16 1hd7_A DNA-(apurinic or apyrim 99.9 7E-24 2.9E-28 147.4 18.8 55 22-91 60-116 (318)
17 2o3h_A DNA-(apurinic or apyrim 99.9 2.7E-23 1.1E-27 144.2 18.5 231 21-303 26-284 (285)
18 2voa_A AF_EXO, XTHA, exodeoxyr 99.9 1.2E-22 5.1E-27 140.6 18.2 228 24-303 2-256 (257)
19 3g91_A MTH0212, exodeoxyribonu 99.9 1.2E-21 4.9E-26 135.2 18.7 228 22-303 2-256 (265)
20 3mtc_A Type II inositol-1,4,5- 99.9 1.4E-21 6E-26 134.7 17.5 70 140-219 120-199 (313)
21 2imq_X Salivary nitrophorin; f 99.9 6.1E-22 2.5E-26 136.8 12.7 241 17-303 2-279 (282)
22 1i9z_A Synaptojanin, phosphati 99.9 9.9E-20 4.2E-24 124.7 22.5 70 140-219 143-216 (347)
23 2jc5_A Exodeoxyribonuclease; h 99.8 4.4E-19 1.8E-23 121.1 18.7 38 24-76 2-39 (259)
24 2ei9_A Non-LTR retrotransposon 99.8 3.9E-19 1.6E-23 121.4 17.7 200 20-303 4-218 (240)
25 2xsw_A 72 kDa inositol polypho 99.8 1.1E-18 4.8E-23 118.9 19.7 233 23-303 27-319 (357)
26 3nr8_B Phosphatidylinositol-3, 99.8 8E-20 3.4E-24 125.2 12.4 170 22-218 8-199 (316)
27 1dbg_A Chondroitinase B; beta 40.6 14 0.00057 14.7 2.4 48 1-73 3-51 (506)
28 1us5_A Putative GLUR0 ligand b 36.8 16 0.00066 14.3 3.3 55 2-73 1-55 (314)
29 1f89_A 32.5 kDa protein YLR351 34.7 17 0.00071 14.1 4.3 47 17-75 4-55 (291)
30 2vhh_A CG3027-PA; hydrolase; 2 30.9 20 0.00083 13.8 3.6 22 54-75 101-122 (405)
31 3c9h_A ABC transporter, substr 26.1 24 0.001 13.3 2.6 51 1-70 1-63 (355)
No 1
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus RN4220} PDB: 3i46_A 3i48_A
Probab=100.00 E-value=1.2e-34 Score=206.15 Aligned_cols=272 Identities=17% Similarity=0.081 Sum_probs=144.2
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCC--CEEEEE--
Q ss_conf 6788269999830147886676667765310188999999999860898899995078579998603334--307862--
Q gi|254781003|r 19 SVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNT--WCIFYS-- 94 (304)
Q Consensus 19 ~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~--~~~~~~-- 94 (304)
.....||||||||+.++... ........+.+.|++.|...+|||||||||.+......+..... |.....
T Consensus 25 ~~~~~lrv~syNi~~~~~~~------~~~~~~~~R~~~i~~~i~~~~~DII~LQEV~~~~~~~~l~~~l~~~~~~~~~~~ 98 (317)
T 3i41_A 25 KDDTDLKLVSHNVYMLSTVL------YPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVL 98 (317)
T ss_dssp ---CCCCEEEEEEEECCTTT------STTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCT
T ss_pred CCCCCEEEEEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 88996899985288876666------787068899999999997669998999867673549999998886589467760
Q ss_pred CCCCCCCC----CCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCC
Q ss_conf 14556754----32234463158998258526765301224676555555653369999982994999999406788877
Q gi|254781003|r 95 TERLINHS----KRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFL 170 (304)
Q Consensus 95 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~ 170 (304)
........ ..........|+++.++.+........... .........|.+..+.+..++..++++|+||.++...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~g~~ilSr~pi~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~v~ntHl~~~~~~ 177 (317)
T 3i41_A 99 GRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKS-GCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSR 177 (317)
T ss_dssp TSCSTTCSEEEESCCSSCSBCCCCEEEESSCEEEEEEEECSC-CCSSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCC-CCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCC
T ss_conf 466543333224445554247737999858830058897367-8884101474469999962997999997435556775
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-C---
Q ss_conf 52000025778999999999999986303-689809998026888776620468987522557531114456787-6---
Q gi|254781003|r 171 DSLENTYSPSCSLLSQQAQWLKDWITQKK-ESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSR-C--- 245 (304)
Q Consensus 171 ~~~~~~~~~~~~~~~~q~~~l~~~~~~~~-~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 245 (304)
... ......+..|++.+..++.... ..+.++|+|||||..+.......... .................. .
T Consensus 178 ~~~----~~~~~~R~~q~~~i~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~ 252 (317)
T 3i41_A 178 CGA----GHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLK-NLNVNDVLYAGHNSTWDPQSNSI 252 (317)
T ss_dssp SCT----THHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTSHHHHHHHH-HHTBCCCEEEECSCSBCTTTCHH
T ss_pred CHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 205----6789999999999998665540146675798444788988779999998-66986530014776545765765
Q ss_pred -CCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEE------ECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf -5646688820147999862043100247217864------11345544455557634389998
Q gi|254781003|r 246 -NANKNLRNKIPIDYFVMDQNAYKFLIQESFSEIL------YNEDDIKSRGKRLSDHCPISIDY 302 (304)
Q Consensus 246 -~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SDH~PV~~~l 302 (304)
........+.||||||++++.............. ............+|||+||++-+
T Consensus 253 ~~~~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~A~~ 316 (317)
T 3i41_A 253 AKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAAAYYYVYNDFSDHYPIKAYS 316 (317)
T ss_dssp HHHHCTTCCCBCCEEEEEBTTSCCCSSEEEEECCCCCSCEEEEETTEEEEECCSSSBCCEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 5656578987148899975740264311004886236631012444567789967610648993
No 2
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=100.00 E-value=6.9e-34 Score=202.02 Aligned_cols=273 Identities=14% Similarity=0.028 Sum_probs=147.2
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEEC
Q ss_conf 58767882699998301478866766677653101889999999998608988999950785799986033343078621
Q gi|254781003|r 16 CTASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYST 95 (304)
Q Consensus 16 ~~~~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~ 95 (304)
.+...++.||||||||++++..-. +......+++.|+++|...+|||||||||.+......+............
T Consensus 3 ~~~~~p~~lki~swNv~~~~~~~~------~~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~~~~~l~~~~~~~~ 76 (301)
T 1zwx_A 3 ASDEYPGNFKITSHNVYLFSRNIY------PNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQT 76 (301)
T ss_dssp ----CCCSCEEEEEEEEECCTTTS------TTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEEC
T ss_pred CCCCCCCCEEEEEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 798999977999776787666657------87358999999999987569998999847773407999998765416212
Q ss_pred CC----CCCC----CCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCC
Q ss_conf 45----5675----432234463158998258526765301224676555555653369999982994999999406788
Q gi|254781003|r 96 ER----LINH----SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSF 167 (304)
Q Consensus 96 ~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~ 167 (304)
.. .... ...........|+++.++.+.......... ..........+.+..+....++..+.++|+|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~lsk~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~ 155 (301)
T 1zwx_A 77 PVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQ-RGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQAD 155 (301)
T ss_dssp CCTTSCSTTCSEEEC-----CCBCCCCEEEESSCEEEEEEEECS-CCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCC
T ss_pred EECCCCCCCCCCEECCCCCCEECCCEEEEEECCCCCCCEEEECC-CCCCCCCCCCCEEEEEEEECCCEEEEEEEECCCCC
T ss_conf 20255666644210134553040554899953564332368605-68873101362189999966995999999545567
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC-CCCCC
Q ss_conf 87752000025778999999999999986303-68980999802688877662046898752255753111445-67876
Q gi|254781003|r 168 CFLDSLENTYSPSCSLLSQQAQWLKDWITQKK-ESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKE-KDSRC 245 (304)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~-~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 245 (304)
...... ......+..|++.+.+++.... ..+.++|+|||||..+........ ................ +....
T Consensus 156 ~~~~~~----~~~~~~R~~q~~~~~~~l~~~~~~~~~~vii~GDfN~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 230 (301)
T 1zwx_A 156 DSLISK----DTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDM-LKLLNVSSPANFNGQMATWDPT 230 (301)
T ss_dssp CTTSCH----HHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHHHH-HHHHTBCCCTTCCTTSCSBCTT
T ss_pred CCCCCH----HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHH-HHHCCCCCCCCCCCCCCCCCCC
T ss_conf 875313----57899999999997754332014675159998466989886799999-9755876410025777753442
Q ss_pred -----CCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEE------ECCCCCCCCCCCCCCCCCEEE
Q ss_conf -----5646688820147999862043100247217864------113455444555576343899
Q gi|254781003|r 246 -----NANKNLRNKIPIDYFVMDQNAYKFLIQESFSEIL------YNEDDIKSRGKRLSDHCPISI 300 (304)
Q Consensus 246 -----~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~SDH~PV~~ 300 (304)
........+.||||||++++.............. ............+|||+||++
T Consensus 231 ~~~~~~~~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PVvA 296 (301)
T 1zwx_A 231 TNSMLKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVG 296 (301)
T ss_dssp TCHHHHHHCTTSCCBCCEEEEEBTTSCCCSCEEEEECCCCCCCEEEEETTEEEEECCSSSSCCEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf 245556565689984488999847414543212048862266421134445688899487205589
No 3
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=100.00 E-value=1.4e-33 Score=200.31 Aligned_cols=278 Identities=15% Similarity=0.087 Sum_probs=146.1
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCC--EEEE
Q ss_conf 58767882699998301478866766677653101889999999998608988999950785799986033343--0786
Q gi|254781003|r 16 CTASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTW--CIFY 93 (304)
Q Consensus 16 ~~~~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~--~~~~ 93 (304)
.+.+..++||||||||++++... .+......+.+.|++.+...+|||||||||.+......+...... ....
T Consensus 2 ~~~~~~~~l~i~T~Ni~~~~~~~------~~~~~~~~r~~~i~~~i~~~~~DIi~LQEV~~~~~~~~~~~~l~~~~~~~~ 75 (306)
T 2ddr_A 2 VSTTQNDTLKVMTHNVYMLSTNL------YPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPNQT 75 (306)
T ss_dssp -----CCEEEEEEEEEEECCTTT------CTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCEEC
T ss_pred CCCCCCCCEEEEEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCE
T ss_conf 77889997799988688576777------887058999999999987369998999847777637899998877535100
Q ss_pred E-CCCCCCCCC------CCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCC
Q ss_conf 2-145567543------223446315899825852676530122467655555565336999998299499999940678
Q gi|254781003|r 94 S-TERLINHSK------RDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKS 166 (304)
Q Consensus 94 ~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~ 166 (304)
. ........+ .........|+++.++.+............ ........+....+.+..++..+.++|+|+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~sr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~ 154 (306)
T 2ddr_A 76 AVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKG-CGPDNLSNKGFVYTKIKKNDRFVHVIGTHLQA 154 (306)
T ss_dssp CCTTSCCSTTSSEEEESCCTTCSSCCCCEEEESSCEEEEEEEECSCC-C----CCCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred EECCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCC-CCCCCCCCCEEEEEEEECCCCEEEEEEECCCC
T ss_conf 11012467764215512445513264379998236400045650567-77653345238999983699589999968776
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCHH-----HHHHHHHCCCCCCCCCCCC
Q ss_conf 887752000025778999999999999986303-6898099980268887766204-----6898752255753111445
Q gi|254781003|r 167 FCFLDSLENTYSPSCSLLSQQAQWLKDWITQKK-ESLVPFVIAGDFNRKINYLGNN-----DDFWKTIDPNDSLIRFPKE 240 (304)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~-~~~~~vIi~GDfN~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 240 (304)
+..... .......+..|++++..++.+.. ..+.++|+|||||..+...... ..++.......+.......
T Consensus 155 ~~~~~~----~~~~~~~~~~q~~~~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (306)
T 2ddr_A 155 EDSMCG----KTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTA 230 (306)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEEECCCCCTTTSSCTTSHHHHHHHHHTBCCCEEEECSC
T ss_pred CCCCCH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 654301----2356789999999877666542134688579971467886642230137888898763444322257886
Q ss_pred CCCC-----CCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEE------EECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 6787-----6564668882014799986204310024721786------41134554445555763438999849
Q gi|254781003|r 241 KDSR-----CNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEI------LYNEDDIKSRGKRLSDHCPISIDYDF 304 (304)
Q Consensus 241 ~~~~-----~~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304)
+... ...........||||||++++............. .............+|||+||+++|+.
T Consensus 231 t~~~~~~~~~~~~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~a~~~l 305 (306)
T 2ddr_A 231 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATISM 305 (306)
T ss_dssp SBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSCCCSEEEEEECCCCCCCEEEEETTEEEEECCSCSSCCEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCEECCCCCCCCCCCCCCCHHEEEEEEE
T ss_conf 526655655565657898856889997862037522200576114443100122357788998861426999997
No 4
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=100.00 E-value=1.6e-32 Score=194.53 Aligned_cols=273 Identities=12% Similarity=0.054 Sum_probs=134.7
Q ss_pred CCEEEEEEEC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHH---HHHHHCCCCCEEEEECC
Q ss_conf 8269999830--147886676667765310188999999999860898899995078579---99860333430786214
Q gi|254781003|r 22 QKVRLVSWNI--NTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNA---VAKVFPKNTWCIFYSTE 96 (304)
Q Consensus 22 ~~lrV~twNi--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~---~~~~~~~~~~~~~~~~~ 96 (304)
.+|||||||| +.+.........+.....++.+.+.|++.|.+.+|||||||||++... +...+...+|...+...
T Consensus 30 ~~lrV~SyNVL~~~~~~~~~~~~~~~~~l~~~~R~~~I~~~I~~~~pDII~LQEV~~~~~~~~l~~~l~~~g~~~~~~~~ 109 (398)
T 3ngq_A 30 ASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPK 109 (398)
T ss_dssp EEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEES
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 81899966857655677333689981664999999999999986699889997476532369999999862983587624
Q ss_pred CCC-CCCCCCCCCCCEEEEEEECCCEEEEE-EECCCCC--------CCCCCCC-----------------CCCCEEEEEE
Q ss_conf 556-75432234463158998258526765-3012246--------7655555-----------------5653369999
Q gi|254781003|r 97 RLI-NHSKRDSNNDIHTAIAVRKKNVRVLQ-QSYPLLG--------AKDSFSR-----------------AGNRRAVELL 149 (304)
Q Consensus 97 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~-----------------~~~r~~~~~~ 149 (304)
... ...........+++++++.+...+.. ..+.+.. ......+ ..........
T Consensus 110 ~~~~~~~~~~~~~~~gvai~~~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (398)
T 3ngq_A 110 SRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPI 189 (398)
T ss_dssp CTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTCCCEEEEEEEEECGGGC-------
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEE
T ss_conf 67654456777666307999866766256677886167666666553001101001332103566411354222102210
Q ss_pred EEECCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------------CCCCCCCEEEEECCCCCCC
Q ss_conf 982994999999406788877520000257789999999999999863-------------0368980999802688877
Q gi|254781003|r 150 VEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQ-------------KKESLVPFVIAGDFNRKIN 216 (304)
Q Consensus 150 ~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~-------------~~~~~~~vIi~GDfN~~~~ 216 (304)
....+..+.++|+||.+...... .+..|++.+.+++.. ....+.++|+|||||..+.
T Consensus 190 ~~~~~~~~~v~ntHL~~~~~~~~----------~r~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~~ 259 (398)
T 3ngq_A 190 HAADKQLLIVANAHMHWDPEYSD----------VKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPD 259 (398)
T ss_dssp ----CCEEEEEEEECCCCTTCHH----------HHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTT
T ss_pred CCCCCCEEEEEEECCCCCCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCC
T ss_conf 15788569999966555665307----------89999999999999999876653201234456874487145467876
Q ss_pred CCCHHHHHHHHHCCCCC-------------CC-----------------C-CCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 66204689875225575-------------31-----------------1-14456787656466888201479998620
Q gi|254781003|r 217 YLGNNDDFWKTIDPNDS-------------LI-----------------R-FPKEKDSRCNANKNLRNKIPIDYFVMDQN 265 (304)
Q Consensus 217 ~~~~~~~~~~~~~~~~~-------------~~-----------------~-~~~~~~~~~~~~~~~~~~~~iD~I~~s~~ 265 (304)
...........+..... .. . ..........+........||||||+|++
T Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~riDyI~~s~~ 339 (398)
T 3ngq_A 260 SGVVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYTNYTFDFKGVIDYIFYSKT 339 (398)
T ss_dssp SHHHHHHHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEEETTTTTSSSCSEECSSCEECCEEEEEETT
T ss_pred CHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECC
T ss_conf 47899987089774310344403444444456554334466444567655433457878752024998953889997376
Q ss_pred HHHCCCCCCEEEEE---ECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 43100247217864---1134554445555763438999849
Q gi|254781003|r 266 AYKFLIQESFSEIL---YNEDDIKSRGKRLSDHCPISIDYDF 304 (304)
Q Consensus 266 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304)
.............. .......+...++|||+||+++|+|
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~SDH~pV~a~~~l 381 (398)
T 3ngq_A 340 HMNVEGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLEL 381 (398)
T ss_dssp TEEEEEEECCCCHHHHHHTTCCSSCBTTBCSSBCCEEEEEEE
T ss_pred CCCEEEEECCCCHHHHCCCCCCCCCCCCCCCCCHHEEEEEEE
T ss_conf 463444205677787120002577788998851407999997
No 5
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-31 Score=189.18 Aligned_cols=261 Identities=13% Similarity=0.125 Sum_probs=127.4
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHH--HHHHHCCCCCEEEEEC
Q ss_conf 76788269999830147886676667765310188999999999860898899995078579--9986033343078621
Q gi|254781003|r 18 ASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNA--VAKVFPKNTWCIFYST 95 (304)
Q Consensus 18 ~~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~--~~~~~~~~~~~~~~~~ 95 (304)
+.++.+||||||||++++.... ....+++.++++|+++|...+|||||||||..... +.+.+.. +.+....
T Consensus 1 s~~p~~lrV~s~Ni~~~~~~~~-----~~~~~~~~R~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~l~~--~~~~~~~ 73 (298)
T 3mpr_A 1 SYQPTSLTVASYNLRNANGSDS-----ARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKDMKEALPG--YDYIGVG 73 (298)
T ss_dssp CCCCEEEEEEEEECCCCCHHHH-----HHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHSTT--EEEECCC
T ss_pred CCCCCCEEEEEEECCCCCCCCC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC--CCEEEEE
T ss_conf 9799966999897880768886-----54667999999999999857998899993337898999976645--7057640
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCEEEEEEE-CCCCCCC----CCCCCCCCCEEEEEE--EEECCEEEEEEEECCCCCC
Q ss_conf 45567543223446315899825852676530-1224676----555555653369999--9829949999994067888
Q gi|254781003|r 96 ERLINHSKRDSNNDIHTAIAVRKKNVRVLQQS-YPLLGAK----DSFSRAGNRRAVELL--VEINGKKIWVLDIHLKSFC 168 (304)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~r~~~~~~--~~~~~~~~~v~n~Hl~~~~ 168 (304)
.. . ........++.++.......... +...... ........+...... ....+..+.++++|+.+..
T Consensus 74 ~~-~-----~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 147 (298)
T 3mpr_A 74 RD-D-----GKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDHIG 147 (298)
T ss_dssp TT-T-----SSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSC
T ss_pred CC-C-----CCCCCCEEEEEEECCCCCEECEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 24-7-----87664214899837743210002330242223444444433331047999985378716999842455561
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCC-CCCCCCCC
Q ss_conf 7752000025778999999999999-986303689809998026888776620468987522557531114-45678765
Q gi|254781003|r 169 FLDSLENTYSPSCSLLSQQAQWLKD-WITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFP-KEKDSRCN 246 (304)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~l~~-~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 246 (304)
... . ..+.+.... ........+.|+|+|||||..+.+............. ....... ......++
T Consensus 148 ~~~-----~-------~~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~t~ 214 (298)
T 3mpr_A 148 KKA-----R-------VESAFLVQEKMKELGRGKNLPAILTGDFNVDQTHQSYDAFVSKGVLC-DSYEKCDYRYALNGTF 214 (298)
T ss_dssp HHH-----H-------HHHHHHHHHHHHHTTTTSCCCEEEEEECSSCTTSHHHHHHHTTSSSE-EHHHHCSEEECSSCSB
T ss_pred HHH-----H-------HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHCCHHH-HHHHHHCCCCCCCCCC
T ss_conf 577-----8-------99988888888653025788789707349898836676554302035-5787616567898875
Q ss_pred C--CCCCCCCCCEEEEEECCCHHHCCC---CCCEEEE------------EECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 6--466888201479998620431002---4721786------------41134554445555763438999849
Q gi|254781003|r 247 A--NKNLRNKIPIDYFVMDQNAYKFLI---QESFSEI------------LYNEDDIKSRGKRLSDHCPISIDYDF 304 (304)
Q Consensus 247 ~--~~~~~~~~~iD~I~~s~~~~~~~~---~~~~~~~------------~~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304)
+ ........||||||+++++..... ....... .............+|||+||+++|+|
T Consensus 215 ~~~~~~~~~~~riDyI~~s~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~~~~ 289 (298)
T 3mpr_A 215 NNFDPNSFTESRIDHIFVSPSFHVKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVF 289 (298)
T ss_dssp CTTCTTCCCSCCCEEEEECTTSEEEEEEECCCCEEEECC----------------CCEEEECSSSBCCEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 544678888861568996797404678996044323222223444444322234456788997842208999999
No 6
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.97 E-value=4.8e-30 Score=181.04 Aligned_cols=242 Identities=15% Similarity=0.120 Sum_probs=116.4
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCCC
Q ss_conf 69999830147886676667765310188999999999860898899995078579998603334307862145567543
Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHSK 103 (304)
Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (304)
||||||||+++.... ....++.+.+.|+++|.+.+|||||||||.... +..+.....+........ +
T Consensus 1 lrI~T~Ni~~~~~~~-------~~~~~~~R~~~i~~~i~~~~~DIi~LQEv~~~~-~~~~~~~~~~~~~~~~~~-~---- 67 (257)
T 3l1w_A 1 MKIATYNVRVDTEYD-------QDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQ-VRDLKAYTTFTCLSAERE-G---- 67 (257)
T ss_dssp CEEEEEECCCCCGGG-------GGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHH-HHHHHHHSSSEEEEEESS-S----
T ss_pred CEEEEEECCCCCCCC-------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHH-HHHHHHHHCCCCEEEECC-C----
T ss_conf 989999678277887-------545899999999999987499999997887799-999875114540244025-7----
Q ss_pred CCCCCCCEEEEEEECCCEEEEEEECCCCCC-----CCCCCCCCCCEE--EEEEEEECCEEEEEEEECCCCCCCCCCCHHH
Q ss_conf 223446315899825852676530122467-----655555565336--9999982994999999406788877520000
Q gi|254781003|r 104 RDSNNDIHTAIAVRKKNVRVLQQSYPLLGA-----KDSFSRAGNRRA--VELLVEINGKKIWVLDIHLKSFCFLDSLENT 176 (304)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~~--~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~ 176 (304)
.......++.+................. .........+.. ..+.....+..+.++++|++.....
T Consensus 68 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~------ 139 (257)
T 3l1w_A 68 --DGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVHLDHISAH------ 139 (257)
T ss_dssp --SSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSCHH------
T ss_pred --CCCCCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCHH------
T ss_conf --777615789972676640442122046674302124544333135788888527883168874266766316------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf 257789999999999999863036898099980268887766204689875225575311--144567876564668882
Q gi|254781003|r 177 YSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIR--FPKEKDSRCNANKNLRNK 254 (304)
Q Consensus 177 ~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 254 (304)
.+..|+..+...... ...+.|+|++||||..+....... ............. ....+.............
T Consensus 140 ------~~~~~~~~~~~~~~~-~~~~~~~iv~GDfN~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (257)
T 3l1w_A 140 ------ARLAGMTVILEELHD-KIAQYPTLLMGDFNAESGEEVHQL-VQKKFQDSKNLATHYGPRGTFQNFTYTKPWAEL 211 (257)
T ss_dssp ------HHHHHHHHHHHHTHH-HHHHSCEEEEEECCCCTTSHHHHH-HTTTCEEGGGTSEEESCSCCBCTTCTTCCGGGC
T ss_pred ------HHHHHHHHHHHHHHH-CCCCCCEEEECCCCCCCCHHHHHH-HHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ------799999998889985-477897688345688743058999-873250445520556886642565566777889
Q ss_pred CCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 01479998620431002472178641134554445555763438999849
Q gi|254781003|r 255 IPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 (304)
Q Consensus 255 ~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304)
.||||||+++.... . .........+..+|||+||+++|+|
T Consensus 212 ~rID~i~~s~~~~~-----~-----~~~~~~~~~~~~~SDH~PV~a~~~~ 251 (257)
T 3l1w_A 212 EEIDYIYVKGWQVQ-----Q-----TASLTDSIDGRFPSDHFPLEAEVAG 251 (257)
T ss_dssp BCCEEEEEESEEEE-----E-----EEECCCCBTTBCSSSBCCEEEEEEE
T ss_pred CEEEEEEEECCEEE-----E-----EEEECCCCCCCCCCCCCCEEEEEEE
T ss_conf 40789998388357-----9-----9994887689987854168999993
No 7
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.97 E-value=2.5e-29 Score=177.11 Aligned_cols=251 Identities=13% Similarity=0.138 Sum_probs=118.0
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH---HHHHHH-HCCCCCEEEEECCC
Q ss_conf 82699998301478866766677653101889999999998608988999950785---799986-03334307862145
Q gi|254781003|r 22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSY---NAVAKV-FPKNTWCIFYSTER 97 (304)
Q Consensus 22 ~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~---~~~~~~-~~~~~~~~~~~~~~ 97 (304)
..+||+||||+++.. +.......+.++|...+|||||||||... ...... ....+|..++....
T Consensus 148 ~~mKIiSWNVNGlR~------------~~kk~~~~l~~~L~~~~pDIIcLQEtk~~~~~~~~~~~~~~~~gY~~~~~~~~ 215 (467)
T 2j63_A 148 RMYKFITWNVAGLRG------------LLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFVDHPCA 215 (467)
T ss_dssp TEEEEEEEECSCHHH------------HHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEEEEEECCS
T ss_pred CEEEEEEEECCCHHH------------HHHCCHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCCCEEEECCC
T ss_conf 446899994047777------------54306589999998569998999874246444697888751378516874246
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCEEEE-----EEECCCCC------------CCCCCCCCCCCEEEEEEE------EECC
Q ss_conf 567543223446315899825852676-----53012246------------765555556533699999------8299
Q gi|254781003|r 98 LINHSKRDSNNDIHTAIAVRKKNVRVL-----QQSYPLLG------------AKDSFSRAGNRRAVELLV------EING 154 (304)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------~~~~~~~~~~r~~~~~~~------~~~~ 154 (304)
... . ..++++.++.+..... ...+.... ..........|.. .+.+ ....
T Consensus 216 ~kk---g----ysGvAi~sK~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~egR~~-~~~~~~~~~~~~~~ 287 (467)
T 2j63_A 216 FKR---G----YSGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVL-TTFLSPDPDSASSS 287 (467)
T ss_dssp SST---T----SCCEEEEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCCEE-EEEECSSCCC----
T ss_pred CCC---C----CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-EEEECCCCCCCCCC
T ss_conf 655---3----040899981776433433111125445676654444443335655566555258-99841565333445
Q ss_pred EEEEEEEECCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHH-----------CCCCCCCEEEEECCCCCCCCCCH--
Q ss_conf 49999994067888775200002-57789999999999999863-----------03689809998026888776620--
Q gi|254781003|r 155 KKIWVLDIHLKSFCFLDSLENTY-SPSCSLLSQQAQWLKDWITQ-----------KKESLVPFVIAGDFNRKINYLGN-- 220 (304)
Q Consensus 155 ~~~~v~n~Hl~~~~~~~~~~~~~-~~~~~~~~~q~~~l~~~~~~-----------~~~~~~~vIi~GDfN~~~~~~~~-- 220 (304)
..+.++|+|.++..........+ ......+...++.|...... ....+.++|||||||..+.....
T Consensus 288 ~~~~l~n~y~pn~~~~~~~~~~r~~~~d~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~vIl~GDfNv~~~~~D~~~ 367 (467)
T 2j63_A 288 SRIALVNTYVANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYY 367 (467)
T ss_dssp CCEEEEEEECCCCCTTSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCC
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH
T ss_conf 88899986467765542026778899999999999999886653101101344555225774687244355752110222
Q ss_pred -----------------HHHHHHHHCCCCCCCCCCC-----CC-CCCCCCCCCC----CCCCCEEEEEECCCHHHCCCCC
Q ss_conf -----------------4689875225575311144-----56-7876564668----8820147999862043100247
Q gi|254781003|r 221 -----------------NDDFWKTIDPNDSLIRFPK-----EK-DSRCNANKNL----RNKIPIDYFVMDQNAYKFLIQE 273 (304)
Q Consensus 221 -----------------~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~----~~~~~iD~I~~s~~~~~~~~~~ 273 (304)
+.++...+.. ..+.+... .. ..++|.+... ....||||||+|+++..++...
T Consensus 368 ~~~~~~~~~~~g~~~eER~~~~~~l~~-~glvDafR~~hP~~~~~YT~W~~r~~~r~~n~G~RIDyilvS~~L~~~V~~~ 446 (467)
T 2j63_A 368 AGTFKSMQECSGFAPEERMSFRETMQR-TNSVDIFRQLYPQAGPVYSFWSQRINGRPRNLGWRLDYFVVSSRLASYVVDC 446 (467)
T ss_dssp CSCHHHHTTSTTSCHHHHHHHHHHHHH-TTEEEHHHHHCTTBCSCCSBCCTTTTTTTTTCCBCCEEEEEEGGGGGGEEEE
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHCEEE
T ss_conf 232430367877898999999999986-7989944303599899838828777843259866025999776997023089
Q ss_pred CEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 2178641134554445555763438999849
Q gi|254781003|r 274 SFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 (304)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304)
.+ .....+|||+||+++|.|
T Consensus 447 ~I-----------~~~~~gSDH~PV~l~Lr~ 466 (467)
T 2j63_A 447 FP-----------MPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp EE-----------CTTCCSSSBCCEEEEEEC
T ss_pred EE-----------CCCCCCCCCCCEEEEEEC
T ss_conf 98-----------689996880464999868
No 8
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.97 E-value=3.1e-29 Score=176.61 Aligned_cols=246 Identities=15% Similarity=0.146 Sum_probs=122.6
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHC------CCCCEEEEEC
Q ss_conf 699998301478866766677653101889999999998608988999950785--79998603------3343078621
Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSY--NAVAKVFP------KNTWCIFYST 95 (304)
Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~--~~~~~~~~------~~~~~~~~~~ 95 (304)
||||||||++|+.. ..+....++.|+++++ +|||||||||.+. ..+..++. ...|......
T Consensus 1 lrI~swNi~~~g~~---------~~~~~~~~~~i~~~~~--~~DIv~LQEv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 69 (260)
T 2a40_B 1 LKIAAFNIRTFGET---------KMSNATLASYIVRIVR--RYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSE 69 (260)
T ss_dssp CEEEEEEEEEESHH---------HHHSHHHHHHHHHHHT--TCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECC
T ss_pred CEEEEEECCCCCCC---------CCCHHHHHHHHHHHCC--CCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 98999966834778---------6663999999999727--999899994224777189999987663258841688557
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEE---ECCEEEEEEEECCCCCCCCCC
Q ss_conf 45567543223446315899825852676530122467655555565336999998---299499999940678887752
Q gi|254781003|r 96 ERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVE---INGKKIWVLDIHLKSFCFLDS 172 (304)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~~~v~n~Hl~~~~~~~~ 172 (304)
.. .........++........................+...|......+. ..+..+.++++|+++..
T Consensus 70 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~h~~~~~---- 139 (260)
T 2a40_B 70 PL------GRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSD---- 139 (260)
T ss_dssp CB------CSSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGG----
T ss_pred CC------CCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCC----
T ss_conf 77------76655745799960553046652012456667755433311027889852677358999850478632----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00002577899999999999998630368980999802688877662046898752255753111445678765646688
Q gi|254781003|r 173 LENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLR 252 (304)
Q Consensus 173 ~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (304)
...+..++..+.+.+.. ...+.++|+|||||..+.+.................... ...........
T Consensus 140 --------~~~~~~~~~~~~~~~~~-~~~~~~~iv~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 206 (260)
T 2a40_B 140 --------AVAEINSLYDVYLDVQQ-KWHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWL----IPDSADTTATS 206 (260)
T ss_dssp --------HHHHHHHHHHHHHHHHH-HHCCCCEEEEEECCCSTTTSCGGGGGGCHHHHSTTEEES----SCTTCCCBSSS
T ss_pred --------HHHHHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCC----CCCCCCCCCCC
T ss_conf --------48999999999999986-365888899466666777525788986135222221124----78888533479
Q ss_pred CCCCEEEEEECCCHHHCCC-CCCEEEEEECCCC--CCCCCCCCCCCCCEEEEEE
Q ss_conf 8201479998620431002-4721786411345--5444555576343899984
Q gi|254781003|r 253 NKIPIDYFVMDQNAYKFLI-QESFSEILYNEDD--IKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 253 ~~~~iD~I~~s~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~SDH~PV~~~l~ 303 (304)
...+|||||+++++..... .....+..+.... .......+|||+||++||+
T Consensus 207 ~~~~iD~i~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~~~ls 260 (260)
T 2a40_B 207 TNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT 260 (260)
T ss_dssp CCCCCEEEEEESHHHHHHBCTTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEBC
T ss_pred CCCCEEEEEECHHHHCCEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 898604999761683662714702675131102566345897187558899979
No 9
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.96 E-value=7.7e-28 Score=168.99 Aligned_cols=246 Identities=18% Similarity=0.082 Sum_probs=115.1
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 82699998301478866766677653101889999999998608988999950785799986033343078621455675
Q gi|254781003|r 22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINH 101 (304)
Q Consensus 22 ~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (304)
++|||+||||++.... +....+..+.+.|+++|++.+|||||||||.... +..+........+........
T Consensus 2 ~~lri~TyNI~~~~~~-------d~~~~~~~R~~~i~~~i~~~~~DIi~LQEv~~~~-~~~l~~~l~~~~~~~~~~~~~- 72 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQ-------DSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQ-FQDLRAGLPEYDGIGVGRDDG- 72 (267)
T ss_dssp EEEEEEEEECCCCCGG-------GGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHH-HHHHHHHCTTEEEECCCTTTS-
T ss_pred CCEEEEEEECCCCCCC-------CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHH-HHHHHHHHCCCCEEEEECCCC-
T ss_conf 9649998957838888-------5536899999999999983799999998576689-899998610065056741466-
Q ss_pred CCCCCCCCCEEEEEEECCCEEE-EEEECCCCC-----CCCCCCCCCCCEEEEEEE--EECCEEEEEEEECCCCCCCCCCC
Q ss_conf 4322344631589982585267-653012246-----765555556533699999--82994999999406788877520
Q gi|254781003|r 102 SKRDSNNDIHTAIAVRKKNVRV-LQQSYPLLG-----AKDSFSRAGNRRAVELLV--EINGKKIWVLDIHLKSFCFLDSL 173 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~r~~~~~~~--~~~~~~~~v~n~Hl~~~~~~~~~ 173 (304)
.......++.++.....+ ......... ..........+......+ ...+....++++|......
T Consensus 73 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 144 (267)
T 3g6s_A 73 ----KTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVGE---- 144 (267)
T ss_dssp ----SSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCH----
T ss_pred ----CCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCHH----
T ss_conf ----778721489996775635542010146542221211333444304678864205888247897324542101----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCC--CCCCC--CCCCCC
Q ss_conf 00025778999999999999986303689809998026888776620468987522557531114--45678--765646
Q gi|254781003|r 174 ENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFP--KEKDS--RCNANK 249 (304)
Q Consensus 174 ~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~ 249 (304)
..+..|......... ....+.|+|++||||..+....................... ..... ......
T Consensus 145 --------~~~~~~~~~~~~~~~-~~~~~~~~i~~GDfN~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (267)
T 3g6s_A 145 --------EARRQSALLIIRKIK-EIVGERPAVVTGDFNVTDASDAYETITTNEFVMKDAYKTAARVTGVDYTFHDFARI 215 (267)
T ss_dssp --------HHHHHHHHHHHHHHH-HHTTTSCEEEEEECSSCTTSHHHHHHHSSSSCCEEHHHHCSEEEECSCSBCTTTTS
T ss_pred --------HHHHHHHHHHHHHHH-HHCCCCCCEECCCCCCCCCCHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCC
T ss_conf --------678999999998765-30268972132667889766899999853654201233213455567643787766
Q ss_pred CCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 688820147999862043100247217864113455444555576343899984
Q gi|254781003|r 250 NLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 250 ~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
......||||||+|+++... ...+ . .......+|||+||+++|+
T Consensus 216 ~~~~~~riD~I~~s~~l~~~----~~~v-----~-~~~~~~~~SDH~PV~~~~~ 259 (267)
T 3g6s_A 216 PAEDCEKIDFIFVTPQVLVK----SCEI-----P-AEVPEALLSDHNPQLADLE 259 (267)
T ss_dssp CGGGCCCCEEEEECTTSEEE----EEEE-----C-CCCSSSCCCSBCCEEEEEE
T ss_pred CCCCCCCEEEEEECCCEEEE----EEEE-----C-CCCCCCCCCCCCCEEEEEE
T ss_conf 77888417799988994799----9997-----5-7889998785420489999
No 10
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.95 E-value=2.2e-25 Score=155.61 Aligned_cols=223 Identities=16% Similarity=0.111 Sum_probs=116.5
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 67882699998301478866766677653101889999999998608988999950785799986033343078621455
Q gi|254781003|r 19 SVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERL 98 (304)
Q Consensus 19 ~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~ 98 (304)
+...+|||+|||++. ...+.+.+.+.+.+.+||||||||+...... .......+..+.....
T Consensus 15 ~~g~~~rvl~~Nv~~----------------~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~~-~~~~~~~~~~~~~~~~- 76 (245)
T 1wdu_A 15 KNGPPYRVLQANLQR----------------KKLATAELAIEAATRKAAIALIQEPYVGGAK-SMKGFRGVRVFQSTAQ- 76 (245)
T ss_dssp ---CCEEEEEEECTT----------------CHHHHHHHHHHHHHHTCSEEEEESCCC-------CCCSSCEEEECCCC-
T ss_pred CCCCCEEEEEECCCC----------------CHHHHHHHHHHHHHHCCCEEEEECCCCCCCC-CCHHCCCCEEEEEECC-
T ss_conf 999987999220499----------------7567999999998629988999869867665-1010455314774456-
Q ss_pred CCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 67543223446315899825852676530122467655555565336999998299499999940678887752000025
Q gi|254781003|r 99 INHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYS 178 (304)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~ 178 (304)
.....+.++.++.+....... +. ........+.+..++..+.++++|+++....+
T Consensus 77 -------~~~~~g~ai~~~~~~~~~~~~--~~---------~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~~------- 131 (245)
T 1wdu_A 77 -------GDGTVKAAIAVFDHDLDVIQY--PQ---------LTTNNIVVVGIRTRAWEITLVSYYFEPDKPIE------- 131 (245)
T ss_dssp -------TTCCCCEEEEECCSSCEEEEC--TT---------TCCSSEEEEEEECSSCEEEEEEEECCTTSCSH-------
T ss_pred -------CCCCCEEEEEEECCCCCCEEE--CC---------CCCCCEEEEEEEECCEEEEEEEEECCCCCCHH-------
T ss_conf -------799848999994676552130--37---------79899689999928932999999669996278-------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCH------HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 778999999999999986303689809998026888776620------46898752255753111445678765646688
Q gi|254781003|r 179 PSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGN------NDDFWKTIDPNDSLIRFPKEKDSRCNANKNLR 252 (304)
Q Consensus 179 ~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (304)
....+ +...+.. ..+.++|+|||||.....-.. ................................
T Consensus 132 ----~~~~~---l~~~~~~--~~~~~~Il~GDfN~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 202 (245)
T 1wdu_A 132 ----SYLEQ---IKRVERK--MGPKRLIFGGDANAKSTWWGSKEDDARGDQLMGTLGELGLHILNEGDVPTFDTIRGGKR 202 (245)
T ss_dssp ----HHHHH---HHHHHHT--TCSSSEEEEEECCCCCGGGTCSSCCHHHHHHHHHHHHHTCEECCCSCCCSEEC-----C
T ss_pred ----HHHHH---HHHHHHH--CCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCC
T ss_conf ----99999---9998875--47964999734353654446653100012333344432222246532101202468888
Q ss_pred CCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 8201479998620431002472178641134554445555763438999849
Q gi|254781003|r 253 NKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 (304)
Q Consensus 253 ~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304)
.+.||||||+|+++....... .+ . .....|||+||.++|..
T Consensus 203 ~~~rID~i~~s~~l~~~~~~~--~v-------~--~~~~~SDH~pv~~~l~l 243 (245)
T 1wdu_A 203 YQSRVDVTFCTEDMLDLIDGW--RV-------D--EDLVSSDHNGMVFNIRL 243 (245)
T ss_dssp CEECCEEEEECGGGBTTEEEE--EE-------C--TTSSSSSBCCEEEEECC
T ss_pred CCCCEEEEEECCHHHHHCEEE--EE-------C--CCCCCCCCCEEEEEEEE
T ss_conf 896248999893686214699--99-------8--99999998108999997
No 11
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.95 E-value=1.5e-25 Score=156.49 Aligned_cols=222 Identities=17% Similarity=0.189 Sum_probs=109.6
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 78826999983014788667666776531018899999999986089889999507857999860333430786214556
Q gi|254781003|r 20 VAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLI 99 (304)
Q Consensus 20 ~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (304)
.+..||||||||+++. ...+...|.++|.+.+||||||||+.....-........+...+.....
T Consensus 4 ~~~~lki~t~Ni~g~~--------------~~~~~~~i~~~i~~~~pDIi~LQEt~~~~~~~~~~~~~~~~~~~~~~~~- 68 (238)
T 1vyb_A 4 SNSHITILTLNINGLN--------------SAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGK- 68 (238)
T ss_dssp CCCCEEEEEEECSCCC--------------SHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEECCS-
T ss_pred CCCCCEEEEEECCCCC--------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCEEEEEECC-
T ss_conf 9888899999888841--------------2344679999998669929999836466244531111034306644103-
Q ss_pred CCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 75432234463158998258526765301224676555555653369999982994999999406788877520000257
Q gi|254781003|r 100 NHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSP 179 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~ 179 (304)
....+.++.++.+........... .......+.+...+..+.++|+|++.... .
T Consensus 69 -------~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~~vy~~~~~~--------~- 122 (238)
T 1vyb_A 69 -------QKKAGVAILVSDKTDFKPTKIKRD----------KEGHYIMVKGSIQQEELTILNIYAPNTGA--------P- 122 (238)
T ss_dssp -------SSSCCEEEEECTTCCCEEEEEEEC----------TTSSEEEEEEEETTEEEEEEEEECCSSSH--------H-
T ss_pred -------CCCCCEEEEEEECCCEECCCCCCC----------CCCCEEEEEEEECCCEEEEEEECCCCCHH--------H-
T ss_conf -------674555899750231001564457----------55540236885057449999623763024--------7-
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCH---------HHHHHHHHCCCCCCCCC----CCCCCCCCC
Q ss_conf 78999999999999986303689809998026888776620---------46898752255753111----445678765
Q gi|254781003|r 180 SCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGN---------NDDFWKTIDPNDSLIRF----PKEKDSRCN 246 (304)
Q Consensus 180 ~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~---------~~~~~~~~~~~~~~~~~----~~~~~~~~~ 246 (304)
... .+.+.. .. ...+.++|++||||..+..... .......+.. ..+... .......++
T Consensus 123 --~~~---~~~~~~-~~--~~~~~~~il~GDfN~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~d~~r~~~~~~~~~t~ 193 (238)
T 1vyb_A 123 --RFI---KQVLSD-LQ--RDLDSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQ-ADLIDIYRTLHPKSTEYTF 193 (238)
T ss_dssp --HHH---HHHHHH-TT--TTCCTTEEEEEECSSCSSGGGBTTCCCCCHHHHHHHHHHHH-TTEEEHHHHHCTTCCCCSE
T ss_pred --HHH---HHHHHH-HH--HHCCCCCEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHH-CCCCCCCCEECCCCCCCCC
T ss_conf --788---888999-98--63036501101004687455423500021356888998863-0355312120136875551
Q ss_pred CCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 646688820147999862043100247217864113455444555576343899984
Q gi|254781003|r 247 ANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 247 ~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
.........||||||+++......... .+. + ..+|||+||+++|-
T Consensus 194 ~~~~~~~~~rID~i~~s~~~~~~~~~~--~v~-------~---~~~SDH~pv~~~Lk 238 (238)
T 1vyb_A 194 FSAPHHTYSKIDHIVGSKALLSKCKRT--EII-------T---NYLSDHSAIKLELR 238 (238)
T ss_dssp EETTTTEEECCEEEEEEGGGGGGEEEE--EEE-------C---CSSSSSCEEEEEEC
T ss_pred CCCCCCCCCEEEEEEECCHHHHHCCEE--EEC-------C---CCCCCCCCEEEEEC
T ss_conf 047889786267999784797026299--968-------9---97998201899969
No 12
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.94 E-value=3.2e-24 Score=149.18 Aligned_cols=229 Identities=20% Similarity=0.203 Sum_probs=108.2
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 699998301478866766677653101889999999998608988999950785--799986033343078621455675
Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSY--NAVAKVFPKNTWCIFYSTERLINH 101 (304)
Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 101 (304)
||||||||+++ ..++++++++|+..+|||||||||... ......+...++........
T Consensus 1 mKi~T~Nvng~----------------r~r~~~~~~~i~~~~pDIv~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~---- 60 (256)
T 2jc4_A 1 MKITTWNVNSL----------------NVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQK---- 60 (256)
T ss_dssp CEEEEEECSCH----------------HHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEECCS----
T ss_pred CEEEEEEECCH----------------HHHHHHHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHHCCCCEEECCCC----
T ss_conf 98999981779----------------9999999999984899899998655580008978972126713541654----
Q ss_pred CCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 43223446315899825852676530122467655555565336999998299499999940678887752000025778
Q gi|254781003|r 102 SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSC 181 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~ 181 (304)
.....++................. . + ...+. ......+ ..++++|+.++...+.....
T Consensus 61 ------~~~~~~~~~~~~~~~~~~~~~~~~-~-~----~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~----- 118 (256)
T 2jc4_A 61 ------TYNGVAIVSRSVPQDVHFGLPALP-D-D----PQRRV---IAATVSG--VRVINVYCVNGEALDSPKFK----- 118 (256)
T ss_dssp ------SSCCEEEEESSCCEEEEESCTTST-T-C----CSCCE---EEEEETT--EEEEEEECCCCCSTTSHHHH-----
T ss_pred ------CCCCCEEEEEECCCCCCCCCCCCC-C-C----CCCEE---EEEECCC--EEEEEEECCCCCCCCHHHHH-----
T ss_conf ------555732788406641112468887-7-7----55159---9985087--79999975699876427799-----
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH----------------HHHHHHHCCCCCCCCCC----CCC
Q ss_conf 9999999999999863036898099980268887766204----------------68987522557531114----456
Q gi|254781003|r 182 SLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNN----------------DDFWKTIDPNDSLIRFP----KEK 241 (304)
Q Consensus 182 ~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~----------------~~~~~~~~~~~~~~~~~----~~~ 241 (304)
.+......+..........+.+++++||||......... ......+.. ...+.. ...
T Consensus 119 -~~~~~~~~~~~~~~~~~~~~~~~~~~gd~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~D~~~~~~~~~ 195 (256)
T 2jc4_A 119 -YKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNLLDL--GLTDSLRQVHPEG 195 (256)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGBSSGGGGTTCTTSCHHHHHHHHHHHTT--TCEEHHHHHCCSS
T ss_pred -HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCHHHHCCCCCCCHHHHHHHHHHHHC--CCEEEEEEECCCC
T ss_conf -9999999999888876224887430343235864877607343014545898999988754315--7389887613898
Q ss_pred CCCCCCCCCCCC-----CCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 787656466888-----201479998620431002472178641134554445555763438999849
Q gi|254781003|r 242 DSRCNANKNLRN-----KIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF 304 (304)
Q Consensus 242 ~~~~~~~~~~~~-----~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f 304 (304)
...++....... ..||||||+|+++........+ .........+|||+||+++|+|
T Consensus 196 ~~~~~~~~~~~~~~~~~g~RIDyI~~S~~l~~~v~~~~v-------~~~~~~~~~~SDH~PV~~~l~~ 256 (256)
T 2jc4_A 196 AFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRV-------DLETRALERPSDHAPVTAEFDW 256 (256)
T ss_dssp CCCCBCCTTTTHHHHTCCBCCEEEEECHHHHTTEEEEEE-------CHHHHTSSSCCSBCCEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHCEEEEE-------EECCCCCCCCCCCCCEEEEEEC
T ss_conf 763257876772416885466899968599733269999-------7312479999982268999969
No 13
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli K12} SCOP: d.151.1.1
Probab=99.94 E-value=1.2e-24 Score=151.64 Aligned_cols=233 Identities=16% Similarity=0.143 Sum_probs=112.2
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHH--HHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 6999983014788667666776531018899999999986089889999507857--99986033343078621455675
Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYN--AVAKVFPKNTWCIFYSTERLINH 101 (304)
Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 101 (304)
+||+||||+++. ++.+.+.++|++.+||||||||+.... .....+...+|.+.+.....
T Consensus 1 Mki~s~NvnGir----------------~r~~~i~~~i~~~~~DIi~LQE~k~~~~~~~~~~~~~~gy~~~~~~~~~--- 61 (268)
T 1ako_A 1 MKFVSFNINGLR----------------ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKG--- 61 (268)
T ss_dssp CEEEEEECSCGG----------------GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEETT---
T ss_pred CEEEEEEHHHHH----------------HHHHHHHHHHHHCCCCEEEEEECCCCCHHCCHHHHHHCCCEEEECCCCC---
T ss_conf 989999723188----------------7598899999878998999983328900189888975596464247546---
Q ss_pred CCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 43223446315899825852676530122467655555565336999998299499999940678887752000025778
Q gi|254781003|r 102 SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSC 181 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~ 181 (304)
....+. .....+......... ....................+.++++|...+....... ..
T Consensus 62 -------~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 122 (268)
T 1ako_A 62 -------HYGVAL-LTKETPIAVRRGFPG------DDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPI---KF-- 122 (268)
T ss_dssp -------EEEEEE-EESSCCSEEEESSTT------CCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTT---HH--
T ss_pred -------CCCCEE-EECCCCHHHCCCCCC------CCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCHHH---HH--
T ss_conf -------666226-512352331048763------33222231011000123587788876416886422002---13--
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH----------------------HHHHHHHCCCCCCCCCCC
Q ss_conf 9999999999999863036898099980268887766204----------------------689875225575311144
Q gi|254781003|r 182 SLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNN----------------------DDFWKTIDPNDSLIRFPK 239 (304)
Q Consensus 182 ~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~ 239 (304)
.........+...+......+.++|++||||..+...... ..+...+.. .+.+...
T Consensus 123 ~~k~~~~~~~~~~~~~~~~~~~~~il~GdfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~D~~r 200 (268)
T 1ako_A 123 PAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSW--GLVDTFR 200 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHT--TEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHCCHHHCCHHHCCCCCCCCCHHHHHHHHHHHHC--CCEEEHH
T ss_conf 78999999999999998737997686345234841765337354011210257656687899999999748--9787714
Q ss_pred CC---CCCCCCCCCC-------CCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 56---7876564668-------8820147999862043100247217864113455444555576343899984
Q gi|254781003|r 240 EK---DSRCNANKNL-------RNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 240 ~~---~~~~~~~~~~-------~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
.. ..+..+++.. ....||||||+|+++........ +. ........+|||+||+++|-
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyil~S~~l~~~~~~~~--i~-----~~~~~~~~~SDH~PV~~~~r 267 (268)
T 1ako_A 201 HANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETG--ID-----YEIRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp HHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTTEEEEE--EC-----HHHHTSSSCCSBCCEEEEEC
T ss_pred HHCCCCCCCCEECCCCCCCCCCCCCEEEEEEEECHHHHHHHEEEE--EE-----HHHCCCCCCCCCCCEEEEEE
T ss_conf 326887875200467677644798678579997879973412888--75-----66418999998544799997
No 14
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.94 E-value=2.4e-26 Score=160.82 Aligned_cols=239 Identities=15% Similarity=0.059 Sum_probs=104.9
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEEEEECCCHHHHHHHHC----CCC--C
Q ss_conf 8767882699998301478866766677653101889999999998-60898899995078579998603----334--3
Q gi|254781003|r 17 TASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAK-NLDADIVFLQEMGSYNAVAKVFP----KNT--W 89 (304)
Q Consensus 17 ~~~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~~~DIi~lQEv~~~~~~~~~~~----~~~--~ 89 (304)
-++..++|||+||||+++.... ..++. ..+.+.+. ..+|||||||||.+......... ... +
T Consensus 9 ~g~~~~~lri~TwNv~~~~~~~--------~~~~~---~~~~~~i~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~ 77 (262)
T 2f1n_A 9 VGTDLTDFRVATWNLQGASATT--------ESKWN---INVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPV 77 (262)
T ss_dssp -CCCGGGCCEEEEEEEECTTSC--------HHHHH---THHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCC
T ss_pred CCCCCCCCEEEEECCCCCCCCC--------CCCHH---HHHHHHHHHCCCCCEEEEECCCCHHCCCHHHHHHHHCCCCCH
T ss_conf 0379876299998489677876--------55358---999999973789899999747861023056665540246524
Q ss_pred EEEEECCCCC-CCCCCC------CCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEE
Q ss_conf 0786214556-754322------344631589982585267653012246765555556533699999829949999994
Q gi|254781003|r 90 CIFYSTERLI-NHSKRD------SNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDI 162 (304)
Q Consensus 90 ~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~ 162 (304)
..+....... ...... .......|.++.++.+.......... ....+....+. ...+.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ilsk~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~~~~~~ 146 (262)
T 2f1n_A 78 RELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLSPV-------RQGGRPLLGIR----IGNDAFFTA 146 (262)
T ss_dssp EEEEEECCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEEEEECCS-------STTCCCEEEEE----ETTEEEEEE
T ss_pred HHHHHCCCCCCCCCEEEEEEECCCCCCCEECCEEEECCCCCCCEECCCC-------CCCCCEEEEEE----ECCCEEEEE
T ss_conf 5543111112477247898631344463412289976561003220787-------65674357887----177269999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 06788877520000257789999999999999863036898099980268887766204689875225575311144567
Q gi|254781003|r 163 HLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKD 242 (304)
Q Consensus 163 Hl~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (304)
|+.+....+... ...++..+..........+.++|++||||..+....... ...+ ........
T Consensus 147 Hl~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~~~~--~~~~------~~~~~~~~ 209 (262)
T 2f1n_A 147 HAIAMRNNDAPA---------LVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNL--TVPV------RRASEIIS 209 (262)
T ss_dssp ECCSSSSCSHHH---------HHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHHHTTS--CHHH------HHTEEEEC
T ss_pred ECCCCCCCCHHH---------HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHH--HHHH------HHHHHHCC
T ss_conf 737888730899---------999999999999885367997573476465715677766--5343------33203128
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 876564668882014799986204310024721786411345544455557634389998
Q gi|254781003|r 243 SRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302 (304)
Q Consensus 243 ~~~~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l 302 (304)
.+ ..++....||||||++++............ .........+|||+||.+.|
T Consensus 210 ~~---~~t~~~~~riD~i~~s~~~~~~~~~~~~~~-----~~~~~~~~~~SDH~PV~~~~ 261 (262)
T 2f1n_A 210 PA---AATQTSQRTLDYAVAGNSVAFRPSPLQAGI-----VYGARRTQISSDHFPVGVSR 261 (262)
T ss_dssp CS---SCSBTTSCCCEEEEEEESSCCCCCCCEEEE-----TTTTSCCCCSCSBCCEEEEC
T ss_pred CC---CCCCCCCCEEEEEEECCCHHCCCCEEEEEE-----EECCCCCCCCCCCHHEEEEE
T ss_conf 99---875799982999998081653521368998-----50335899648854238984
No 15
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.93 E-value=2e-25 Score=155.80 Aligned_cols=246 Identities=15% Similarity=0.079 Sum_probs=109.4
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHC----CCCCE---EEE
Q ss_conf 88269999830147886676667765310188999999999860898899995078579998603----33430---786
Q gi|254781003|r 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFP----KNTWC---IFY 93 (304)
Q Consensus 21 ~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~----~~~~~---~~~ 93 (304)
.+.||||||||+++.... ..++... ....++...+|||||||||.+......... ..+.. ...
T Consensus 2 ~~~frv~TwNi~~~~~~~--------~~~~~~~--~~~~~~~~~~~DVi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (261)
T 1sr4_B 2 LSDFKVATWNLQGSSAVN--------ESKWNIN--VRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTW 71 (261)
T ss_dssp GGGSCEEEEECCCCSSSS--------HHHHHHH--HHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEE
T ss_pred CCCCEEEEEECCCCCCCC--------CCCCCHH--HHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 987789999799587875--------5542289--999997567979999991674234115688776641765330122
Q ss_pred ECCCCCCCCCC------CCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCC
Q ss_conf 21455675432------234463158998258526765301224676555555653369999982994999999406788
Q gi|254781003|r 94 STERLINHSKR------DSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSF 167 (304)
Q Consensus 94 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~ 167 (304)
........... ........+.++.++.+.......... ......|.+..+.+ ....++++|+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ils~~~~~~~~~~~~~-----~~~~~~R~~~~~~~----~~~~~~~~~~~~~ 142 (261)
T 1sr4_B 72 NLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSD-----SSVLQSRPAVGIRI----GTDVFFTVHALAT 142 (261)
T ss_dssp ESSCSSSCCEEEEEEECCCTTTSCSCEEEEESSCCSEEEEECCC-----CCSSCCCCEEEEEE----TTEEEEEEECCTT
T ss_pred ECCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCEEECCCC-----CCCCCCCCEEEEEE----ECCCEEEEEEECC
T ss_conf 02565677515899752345564243799979876333783689-----76656530599998----1352233886458
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 87752000025778999999999999986303689809998026888776620468987522557531114456787656
Q gi|254781003|r 168 CFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNA 247 (304)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (304)
...+... ....+..............+.|+|+|||||..+..... ..+... ............
T Consensus 143 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~il~GDfN~~~~~~~~-----~~~~~~-~~~~~~~~~~~~--- 205 (261)
T 1sr4_B 143 GGSDAVS--------LIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPANLEV-----ALRQEP-AVSENTIIIAPT--- 205 (261)
T ss_dssp TTTTHHH--------HHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHHHHH-----HHTTSH-HHHHTCEEECCS---
T ss_pred CCCCCHH--------HHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH-----HHHHHC-CCCCCEEECCCC---
T ss_conf 8753489--------99999999999998752568876984345887521578-----987613-554413204777---
Q ss_pred CCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 46688820147999862043100247217864113455444555576343899984
Q gi|254781003|r 248 NKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 248 ~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
..+.....+|||||+++....+.......... ...........+|||+||..-++
T Consensus 206 ~~t~~~~~~iD~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~SDH~PV~~~~~ 260 (261)
T 1sr4_B 206 EPTHRSGNILDYAILHDAHLPRREQARERIGA-SLMLNQLRSQITSDHFPVSFVRD 260 (261)
T ss_dssp SCSBTTSCCCEEEEEECTTSCTTCGGGCCEEE-EECGGGCSSCCSSSBCCEEEEEC
T ss_pred CCCCCCCCCEEEEEECCCCCCEEECCCCCEEE-EEECCCCCCCCCCCCHHHEEEEC
T ss_conf 78569898574899767010303214420233-44123347996287650388848
No 16
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 2isi_A
Probab=99.93 E-value=7e-24 Score=147.35 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=34.8
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--HHHHHHHHCCCCCEE
Q ss_conf 8269999830147886676667765310188999999999860898899995078--579998603334307
Q gi|254781003|r 22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGS--YNAVAKVFPKNTWCI 91 (304)
Q Consensus 22 ~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~--~~~~~~~~~~~~~~~ 91 (304)
.+|||+||||+++. .. ..+.+.++|++.+||||||||+.. ......+....+|..
T Consensus 60 ~~mki~swNvnGlr--------------~~-~k~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~l~~~~g~~~ 116 (318)
T 1hd7_A 60 ATLKICSWNVDGLR--------------AW-IKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSH 116 (318)
T ss_dssp CCEEEEEEECSSHH--------------HH-HHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCE
T ss_pred CCEEEEEEECCCHH--------------HH-HHCCHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHCCCCCE
T ss_conf 87699999838857--------------61-13448999975899589998353780128888895179964
No 17
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.92 E-value=2.7e-23 Score=144.18 Aligned_cols=231 Identities=14% Similarity=0.098 Sum_probs=99.7
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHCCCCCEEEEECCCC
Q ss_conf 882699998301478866766677653101889999999998608988999950785--799986033343078621455
Q gi|254781003|r 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSY--NAVAKVFPKNTWCIFYSTERL 98 (304)
Q Consensus 21 ~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~--~~~~~~~~~~~~~~~~~~~~~ 98 (304)
+.+|||+||||+++. . ...+.+.++|++.+|||||||||... .....+....+|.........
T Consensus 26 ~~~mkiiSwNvnGlr--------------~-~~~~~~~~~l~~~~pDIi~LQE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (285)
T 2o3h_A 26 PATLKIASWNVDGLR--------------A-WIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPS 90 (285)
T ss_dssp BCCEEEEEEECSSHH--------------H-HHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECBC
T ss_pred CCCEEEEEEECCCHH--------------H-HHHCCHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHCCCCCEEEEECCC
T ss_conf 996799999817877--------------7-3233589999757997999997547811188868615787445541135
Q ss_pred CCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 67543223446315899825852676530122467655555565336999998299499999940678887752000025
Q gi|254781003|r 99 INHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYS 178 (304)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~ 178 (304)
. ......+..+.+..+............. ... ........+..+..++++......... ..
T Consensus 91 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~- 151 (285)
T 2o3h_A 91 D-------KEGYSGVGLLSRQCPLKVSYGIGDEEHD-------QEG-RVIVAEFDSFVLVTAYVPNAGRGLVRL---EY- 151 (285)
T ss_dssp ---------CCSCCEEEEESSCCSEEEESCSCGGGS-------SBC-CEEEEECSSCEEEEEECCCCCGGGTTH---HH-
T ss_pred C-------CCCCCCCCCCCCCCCEEEEECCCCCCCC-------CCC-EEEEEEECCEEEEEEEECCCCCCCCCH---HH-
T ss_conf 5-------6654431232466860566357877444-------332-189998354499999704677752006---78-
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCH----------------HHHHHHHHCCCCCCCCCC----
Q ss_conf 778999999999999986303689809998026888776620----------------468987522557531114----
Q gi|254781003|r 179 PSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGN----------------NDDFWKTIDPNDSLIRFP---- 238 (304)
Q Consensus 179 ~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~----------------~~~~~~~~~~~~~~~~~~---- 238 (304)
. .+..............+.+++++||||........ ...+...+... ++....
T Consensus 152 -----~-~~~~~~~~~~~~~~~~~~~~i~~gd~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~d~~r~~~ 224 (285)
T 2o3h_A 152 -----R-QRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAV-PLADSFRHLY 224 (285)
T ss_dssp -----H-HHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGGBSCTTTCTTSTTSCHHHHHHHHHHHHHT-TCEEHHHHHC
T ss_pred -----H-HHHHHHHHHHHHHHCCCCEEEEECCHHCCCCHHHCCCHHHHHHCCCCCCHHHHHHHHHHHCC-CCCCCEEEEC
T ss_conf -----8-87756665544430465438970511128624320476764200246838888899997414-7544202424
Q ss_pred -CCCCC-CCCCCCC----CCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf -45678-7656466----88820147999862043100247217864113455444555576343899984
Q gi|254781003|r 239 -KEKDS-RCNANKN----LRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 239 -~~~~~-~~~~~~~----~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
..... +++.+.. .....||||||+|+++..+.... .+ .....+|||+||+++|+
T Consensus 225 p~~~~~yT~~s~~~~~~~~~~g~RID~Il~S~~l~~~v~~~--~v---------~~~~~~SDH~PV~v~L~ 284 (285)
T 2o3h_A 225 PNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDS--KI---------RSKALGSDHCPITLYLA 284 (285)
T ss_dssp TTCCSCCSBCCSSTTHHHHTCCBCCEEEEECGGGGGGEEEE--EE---------CTTCCSSSBCCEEEEEC
T ss_pred CCCCCCEEEECCCCCCCCCCCCEEEEEEEECHHHHHHCEEE--EE---------CCCCCCCCCCCEEEEEE
T ss_conf 89998267545878845279966768999783897131078--98---------78999998326899997
No 18
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.91 E-value=1.2e-22 Score=140.61 Aligned_cols=228 Identities=17% Similarity=0.135 Sum_probs=100.5
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 699998301478866766677653101889999999998608988999950785--799986033343078621455675
Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSY--NAVAKVFPKNTWCIFYSTERLINH 101 (304)
Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 101 (304)
+|||||||+++. .+.+.++++|++.+|||||||||... ..........++......
T Consensus 2 mKI~T~NvnG~r----------------~r~~~~~~~i~~~~pDIi~lQEvk~~~~~~~~~~~~~~~~~~~~~~------ 59 (257)
T 2voa_A 2 LKIATFNVNSIR----------------SRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSG------ 59 (257)
T ss_dssp EEEEEEECSCGG----------------GTHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEE------
T ss_pred EEEEEEEECHHH----------------HHHHHHHHHHHHCCCCEEEEEECCCCHHHCCHHHHHHCCCEEEECC------
T ss_conf 199999805299----------------8699889999868996999996766924478878731363146503------
Q ss_pred CCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 43223446315899825852676530122467655555565336999998299499999940678887752000025778
Q gi|254781003|r 102 SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSC 181 (304)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~ 181 (304)
........+..+.+........... ..+. .+. ..... ..+.++.+|+......+.....
T Consensus 60 ----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~----- 118 (257)
T 2voa_A 60 ----SKGRNGVAIASLEEPEDVSFGLDSE--PKDE-----DRL---IRAKI--AGIDVINTYVPQGFKIDSEKYQ----- 118 (257)
T ss_dssp ----ETTEEEEEEEESSCCEEEEESCSSS--SCCG-----GGE---EEEEE--TTEEEEEEECCCCSCTTSHHHH-----
T ss_pred ----CCCCCCCEEEECCCCEEEEECCCCC--CCCC-----CEE---EEEEE--CCEEEEEEEEECCCCCCHHHHH-----
T ss_conf ----4776661133047850588424212--3566-----458---99872--6759999983068779768888-----
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH---------------HHHHHHHCCCCCCCCCC-----CCC
Q ss_conf 9999999999999863036898099980268887766204---------------68987522557531114-----456
Q gi|254781003|r 182 SLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNN---------------DDFWKTIDPNDSLIRFP-----KEK 241 (304)
Q Consensus 182 ~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~---------------~~~~~~~~~~~~~~~~~-----~~~ 241 (304)
..... ................+++++||||......... ......+.. ..+.+.. ...
T Consensus 119 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gl~D~~r~~~~~~~ 196 (257)
T 2voa_A 119 YKLQW-LERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDARRAYKKILE-LGFVDVLRKIHPNER 196 (257)
T ss_dssp HHHHH-HHHHHHHHHHHCCTTSCEEEEEECSCCCSGGGBSCGGGCTTSTTTCHHHHHHHHHHHT-TTCEEHHHHHSTTCC
T ss_pred HHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCHHHHHHHHHHHH-CCCCCHHHHHCCCCC
T ss_conf 88877-8999999998664202323333101384064335804334666578899999999987-688120154379998
Q ss_pred CCCCCCCCC-----CCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 787656466-----88820147999862043100247217864113455444555576343899984
Q gi|254781003|r 242 DSRCNANKN-----LRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 242 ~~~~~~~~~-----~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
...++.+.. .....||||||+|+++........ ....+..+..+|||+||+++|+
T Consensus 197 ~~~~~~~~~~~~~~~~~g~RIDyIl~s~~l~~~~~~~~-------v~~~~~~~~~~SDH~PV~~~l~ 256 (257)
T 2voa_A 197 IYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVDCY-------ADIKPRLAEKPSDHLPLVAVFD 256 (257)
T ss_dssp CCSBCCTTSTTTTTTTCCBCCEEEEECHHHHTTEEEEE-------ECCHHHHSSSCCSBCCEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHCEEE-------EEEEECCCCCCCCCEEEEEEEE
T ss_conf 63106765787434799677799997869986520899-------8651047999998237999998
No 19
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.89 E-value=1.2e-21 Score=135.20 Aligned_cols=228 Identities=14% Similarity=0.156 Sum_probs=103.2
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC-HHHH-HHHHCCCCCEEEEECCCCC
Q ss_conf 8269999830147886676667765310188999999999860898899995078-5799-9860333430786214556
Q gi|254781003|r 22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGS-YNAV-AKVFPKNTWCIFYSTERLI 99 (304)
Q Consensus 22 ~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~-~~~~-~~~~~~~~~~~~~~~~~~~ 99 (304)
..|||+||||+++. . .+.+.+.++|++.+|||||||||.. ...+ ..+....++...+......
T Consensus 2 ~~mki~SwNvngl~--------------~-~~~~~~~~~i~~~~pDIi~LQEvk~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (265)
T 3g91_A 2 AVLKIISWNVNGLR--------------A-VHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERK 66 (265)
T ss_dssp CEEEEEEEECSCHH--------------H-HHHHTHHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEECBSST
T ss_pred CCEEEEEEEECCHH--------------H-HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCEEEEEECCCC
T ss_conf 86099999924288--------------8-77773999997589969998815078000898787247861688612223
Q ss_pred CCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 75432234463158998258526765301224676555555653369999982994999999406788877520000257
Q gi|254781003|r 100 NHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSP 179 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~ 179 (304)
.....++..+.+........... ... ..... +.... ..+.+.++|+..........
T Consensus 67 --------~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~----- 122 (265)
T 3g91_A 67 --------GYSGVAMYTKVPPSSLREGFGVE------RFD--TEGRI-QIADF--DDFLLYNIYFPNGAMSEERL----- 122 (265)
T ss_dssp --------TSCCEEEEESSCCSEEECCCSCH------HHH--SBSCE-EEEEC--SSCEEEEEECCCCTTCHHHH-----
T ss_pred --------CCCCEEEEECCCCCCCCCCCCCC------CCC--CHHEE-EEEEC--CCEEEEEEECCCCCCCCHHH-----
T ss_conf --------22434786326752000378876------534--02046-75522--98899999605886431125-----
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHH----------------HHHHHHCCCCCCCCCC-----
Q ss_conf 7899999999999998630368980999802688877662046----------------8987522557531114-----
Q gi|254781003|r 180 SCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNND----------------DFWKTIDPNDSLIRFP----- 238 (304)
Q Consensus 180 ~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~----------------~~~~~~~~~~~~~~~~----- 238 (304)
.........+..........+.+.+++||+|.........+ ......+. .+.+..
T Consensus 123 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~D~~~~~~~ 198 (265)
T 3g91_A 123 --KYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIEN--GYVDTFRMFNS 198 (265)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBSCTGGGTTSTTSCHHHHHHHHHHHHT--TEEETHHHHCC
T ss_pred --HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHC--CCEEEEHHHCC
T ss_conf --77889999999999998546784672065102870440468666278968998999876533436--98101242278
Q ss_pred CCCCCCCCCCC----CCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 45678765646----688820147999862043100247217864113455444555576343899984
Q gi|254781003|r 239 KEKDSRCNANK----NLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 239 ~~~~~~~~~~~----~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
......+++.. ......||||||+|+++..+..... +. ....+|||+||++||+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~RIDyIl~s~~l~~~v~~~~--v~---------~~~~~SDH~PV~~el~ 256 (265)
T 3g91_A 199 DPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSW--IL---------SDVMGSDHCPIGLEIE 256 (265)
T ss_dssp CSCCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGGGEEEEE--EC---------TTCCSSSBCCEEEEEE
T ss_pred CCCCCEECCCCCCCCCCCCCEEEEEEEECHHHHHHCCEEE--EC---------CCCCCCCCCCEEEEEE
T ss_conf 9996143378788755899757589997759970244999--84---------7999999257899999
No 20
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens}
Probab=99.89 E-value=1.4e-21 Score=134.74 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=42.8
Q ss_pred CCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----------HHCCCCCCCEEEEE
Q ss_conf 56533699999829949999994067888775200002577899999999999998----------63036898099980
Q gi|254781003|r 140 AGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWI----------TQKKESLVPFVIAG 209 (304)
Q Consensus 140 ~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~----------~~~~~~~~~vIi~G 209 (304)
....+++.+.+..++..+.++|+|++++..... .+..+...+...+ ......+.++|+||
T Consensus 120 ~~~kg~~~~~~~i~~~~~~~in~hl~~~~~~~~----------~r~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~vi~~G 189 (313)
T 3mtc_A 120 MGNKGGVAIRFQFHNTSICVVNSHLAAHIEEYE----------RRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLG 189 (313)
T ss_dssp STTSEEEEEEEEETTEEEEEEEEECCCSGGGHH----------HHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEE
T ss_pred CCCCCEEEEEEEECCEEEEEEEECCCCCCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 688851999999999999999962688887304----------4355089988766555666665566522698699952
Q ss_pred CCCCCCCCCC
Q ss_conf 2688877662
Q gi|254781003|r 210 DFNRKINYLG 219 (304)
Q Consensus 210 DfN~~~~~~~ 219 (304)
|||..+....
T Consensus 190 D~N~~~~~~~ 199 (313)
T 3mtc_A 190 DLNYRIEELD 199 (313)
T ss_dssp ECCCCBCSSC
T ss_pred CCCCCCCCCC
T ss_conf 3442456545
No 21
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.88 E-value=6.1e-22 Score=136.77 Aligned_cols=241 Identities=12% Similarity=0.055 Sum_probs=109.1
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE--EEEEECCCHH-------H----HHHH
Q ss_conf 8767882699998301478866766677653101889999999998608988--9999507857-------9----9986
Q gi|254781003|r 17 TASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADI--VFLQEMGSYN-------A----VAKV 83 (304)
Q Consensus 17 ~~~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DI--i~lQEv~~~~-------~----~~~~ 83 (304)
|++..-+++|+||||++..... ++..+...+...+||| |||||+.... . +.+.
T Consensus 2 ~p~~~~~v~i~TWNvn~~~~~~--------------~l~~~l~~~~~~~pDI~vi~lQE~~~~~~~~~~~~~~~~~~~~~ 67 (282)
T 2imq_X 2 SPPAQLSVHTVSWNSGHERAPT--------------NLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSL 67 (282)
T ss_dssp -CCSEEEEEEEEEEEETCCCCS--------------CCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEECCCCCCCCC--------------CHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 7988777999998379970761--------------88988575656898989998570883603452227999999987
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEC
Q ss_conf 03334307862145567543223446315899825852676530122467655555565336999998299499999940
Q gi|254781003|r 84 FPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIH 163 (304)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~H 163 (304)
....+|....... ..+.++++..+........................+++.+.+...+..+.++|+|
T Consensus 68 ~~~~~Y~~v~~~~------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nkG~v~i~~~~~~~~~~~vn~h 135 (282)
T 2imq_X 68 LTSKGYTKLKNTI------------TETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKRFSFTTSR 135 (282)
T ss_dssp HHHTTEEEEEEEE------------CSSEEEEEEEEGGGCCTTTCCCEEEEEECSTTSCSEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCEEEEEEEE------------CCCCEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 1678648999850------------3563169984155344434743357621430026742999961389341454654
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHH-------HHHHCC------
Q ss_conf 6788877520000257789999999999999863036898099980268887766204689-------875225------
Q gi|254781003|r 164 LKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDF-------WKTIDP------ 230 (304)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~-------~~~~~~------ 230 (304)
+.++........... .+..........+..+|++||||............ ...+..
T Consensus 136 l~~~~~~~~~r~~~~-----------~~~~~~~~~~~~~d~~i~~GDlN~r~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 204 (282)
T 2imq_X 136 MSDEDVTSTNTKYAY-----------DTRLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKA 204 (282)
T ss_dssp CCTTCCCTTSSSSSC-----------CGGGCTTSSSSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHH
T ss_pred CCCCCHHHHHHHHHH-----------HHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 543017999998999-----------876510345777874674366554434221456666420489999874667654
Q ss_pred --CCCC--------CCCCCCCCCC-CCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEE
Q ss_conf --5753--------1114456787-6564668882014799986204310024721786411345544455557634389
Q gi|254781003|r 231 --NDSL--------IRFPKEKDSR-CNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPIS 299 (304)
Q Consensus 231 --~~~~--------~~~~~~~~~~-~~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~ 299 (304)
...+ .+.+...... ...+...+-|+++||||+++.+...+. ...+.. .+ ...+|||+||+
T Consensus 205 ~~~~~f~~~~e~~~~F~~~~~~~~~~~~~~~~Ripsw~DrIL~s~~~~~~v~-----~~~y~~--~~--~~~~SDH~PV~ 275 (282)
T 2imq_X 205 KEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATPSWTDRALYKSGTGKTIQ-----PLSYNS--LT--NYKQTEHRPVL 275 (282)
T ss_dssp HHTTSSTTCBCCCCCSCCCBCBCTTSSCBCTTSCCBCCEEEEEECSSSCCEE-----EEEEEE--CT--TCCSSSSCCEE
T ss_pred HHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCE-----EEEEEE--CC--CCCCCCCCCEE
T ss_conf 2223202353688734995125777654677526766777997887578538-----958777--88--88888890479
Q ss_pred EEEE
Q ss_conf 9984
Q gi|254781003|r 300 IDYD 303 (304)
Q Consensus 300 ~~l~ 303 (304)
++|+
T Consensus 276 a~F~ 279 (282)
T 2imq_X 276 AKFR 279 (282)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
No 22
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.87 E-value=9.9e-20 Score=124.67 Aligned_cols=70 Identities=17% Similarity=0.129 Sum_probs=44.8
Q ss_pred CCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHCCCCCCCEEEEECCCCCC
Q ss_conf 56533699999829949999994067888775200002577899999999999998----63036898099980268887
Q gi|254781003|r 140 AGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWI----TQKKESLVPFVIAGDFNRKI 215 (304)
Q Consensus 140 ~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~----~~~~~~~~~vIi~GDfN~~~ 215 (304)
.+..+++.+++...+..+.++|+||+++..... .+..+...+...+ ........++|++||||...
T Consensus 143 ~gnKGaV~i~~~i~~~~l~fvn~HL~ag~~~~~----------~R~~~~~~i~~~l~~~~~~~~~~~d~v~~~GDlN~r~ 212 (347)
T 1i9z_A 143 SGNKGAVAIRFDYEDTGLCFITSHLAAGYTNYD----------ERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRI 212 (347)
T ss_dssp --CCEEEEEEEEETTEEEEEEEEECCCCSSCHH----------HHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCB
T ss_pred CCCCEEEEEEEEECCEEEEEEECCCCCCCCHHH----------HHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 278526999999989999999706787763288----------8998899999973234554445775368743644110
Q ss_pred CCCC
Q ss_conf 7662
Q gi|254781003|r 216 NYLG 219 (304)
Q Consensus 216 ~~~~ 219 (304)
+...
T Consensus 213 ~~~~ 216 (347)
T 1i9z_A 213 SLTY 216 (347)
T ss_dssp SSCH
T ss_pred CCCH
T ss_conf 1451
No 23
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.84 E-value=4.4e-19 Score=121.14 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=28.9
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 69999830147886676667765310188999999999860898899995078
Q gi|254781003|r 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGS 76 (304)
Q Consensus 24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~ 76 (304)
+||+||||+++. . ...+.+.++|++.+|||||||||..
T Consensus 2 mki~swNv~G~~--------------~-~~~~~~~~~i~~~~pDIi~LQEv~~ 39 (259)
T 2jc5_A 2 LKIISANVNGIR--------------S-AYKKGFYEYIAASGADIVCVQELKA 39 (259)
T ss_dssp EEEEEEECSSHH--------------H-HHHTTHHHHHHHTTCSEEEEECCCC
T ss_pred EEEEEEECCCHH--------------H-HHHCHHHHHHHHCCCCEEEEECCCC
T ss_conf 199999834677--------------7-5663099999867999999973616
No 24
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.84 E-value=3.9e-19 Score=121.41 Aligned_cols=200 Identities=16% Similarity=0.153 Sum_probs=103.0
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 78826999983014788667666776531018899999999986089889999507857999860333430786214556
Q gi|254781003|r 20 VAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLI 99 (304)
Q Consensus 20 ~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (304)
...+|||++||+++. ..+.+.|.++++..++|||||||.... .++..
T Consensus 4 ~~~~LrI~~~N~~~~----------------~~~~~~l~~~~~~~~~DIv~lQE~~~~---------~~~~~-------- 50 (240)
T 2ei9_A 4 IRPRLRIGQINLGGA----------------EDATRELPSIARDLGLDIVLVQEQYSM---------VGFLA-------- 50 (240)
T ss_dssp --CEEEEEEEECTTC----------------HHHHHTHHHHHHHHTCSEEEEESCCTT---------SSSEE--------
T ss_pred CCCCCEEEEEECCCC----------------HHHHHHHHHHHHHHCCCEEEEECCCCC---------CCCCC--------
T ss_conf 778368999807984----------------889999999999759999999655607---------88502--------
Q ss_pred CCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 75432234463158998258526765301224676555555653369999982994999999406788877520000257
Q gi|254781003|r 100 NHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSP 179 (304)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~ 179 (304)
......+.++.++.+........ . .. ...+ +.+..++..+.++++|+++....+
T Consensus 51 -----~~~~~~g~ai~v~~~~~~~~~~~--~------~~---~~~~--~~~~~~~~~~~i~svY~pp~~~~~-------- 104 (240)
T 2ei9_A 51 -----QCGAHPKAGVYIRNRVLPCAVLH--H------LS---STHI--TVVHIGGWDLYMVSAYFQYSDPID-------- 104 (240)
T ss_dssp -----CCSSSCSEEEEESSTTSCEEECG--G------GC---CSSE--EEEEETTTTEEEEEEECCTTSCSH--------
T ss_pred -----EECCCCCEEEEEECCCCCCCCCC--C------CC---CCCE--EEEEECCEEEEEEEEECCCCCCHH--------
T ss_conf -----24589968999956875532101--4------78---6657--999979928999999849798558--------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCH-----------HHH----HHHHHCCCCCCCCCCCCCCCC
Q ss_conf 78999999999999986303689809998026888776620-----------468----987522557531114456787
Q gi|254781003|r 180 SCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGN-----------NDD----FWKTIDPNDSLIRFPKEKDSR 244 (304)
Q Consensus 180 ~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~-----------~~~----~~~~~~~~~~~~~~~~~~~~~ 244 (304)
.. ...+...+.. ..+.++|++||||.....-.. .+. +...... ..+..... ...
T Consensus 105 ---~~---~~~l~~~~~~--~~~~~~ii~GDfN~~~~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~l~~~~~--~~~ 173 (240)
T 2ei9_A 105 ---PY---LHRLGNILDR--LRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKMEDFIGA-RRLVVHNA--DGH 173 (240)
T ss_dssp ---HH---HHHHHHHHHH--TTTSCEEEEEECCCCCGGGTCCHHHHSSSCHHHHHHHHHHHHHHHH-TTCEECCC--TTC
T ss_pred ---HH---HHHHHHHHHH--CCCCCEEEECHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCEEEECC--CCC
T ss_conf ---99---9999999986--6999669830110456000465434445555442335568876531-55177315--788
Q ss_pred CCCCCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 65646688820147999862043100247217864113455444555576343899984
Q gi|254781003|r 245 CNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 245 ~~~~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 303 (304)
..++.......+|||+|+++.... . ...+. .. ..|||+||.++|.
T Consensus 174 ~~Tf~~~~~~~~ID~~~~s~~~~~--~--~~~v~-------~~---~~SDH~~I~~~l~ 218 (240)
T 2ei9_A 174 LPTFSTANGESYVDVTLSTRGVRV--S--EWRVT-------NE---SSSDHRLIVFGVG 218 (240)
T ss_dssp CCSEEETTEEECCEEEEECTTCCE--E--EEEEC-------SC---CSSSBCCEEEEEE
T ss_pred CEECCCCCCCCEECEEEECCCEEE--E--EEEEC-------CC---CCCCCHHEEEEEE
T ss_conf 201668998878464980797016--6--58966-------89---9999545699997
No 25
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.83 E-value=1.1e-18 Score=118.89 Aligned_cols=233 Identities=13% Similarity=0.110 Sum_probs=104.5
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----HHHCCC--EEEEEECCCHH-HHH-HHHCCC--CCEEE
Q ss_conf 269999830147886676667765310188999999999----860898--89999507857-999-860333--43078
Q gi|254781003|r 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYA----KNLDAD--IVFLQEMGSYN-AVA-KVFPKN--TWCIF 92 (304)
Q Consensus 23 ~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i----~~~~~D--Ii~lQEv~~~~-~~~-~~~~~~--~~~~~ 92 (304)
++-|+||||++-.+.. . .+.+++ ....|| ||||||+.... .+. .+.... +|..+
T Consensus 27 ~I~v~TWNvng~~~~~-----~-----------~l~~~l~~~~~~~~~DI~viglQE~~~~~~~w~~~i~~~lg~~Y~~v 90 (357)
T 2xsw_A 27 ALFVATWNMQGQKELP-----P-----------SLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLL 90 (357)
T ss_dssp EEEEEEEECTTCSSCC-----S-----------CCHHHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHCTTEEEE
T ss_pred EEEEEEECCCCCCCCC-----H-----------HHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 8999988169866880-----6-----------58987356777779997999734288658899999999729894999
Q ss_pred EECCCCCCCCCCCCCCCCEEEEEEECCCEEE---EEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCC
Q ss_conf 6214556754322344631589982585267---6530122467655555565336999998299499999940678887
Q gi|254781003|r 93 YSTERLINHSKRDSNNDIHTAIAVRKKNVRV---LQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCF 169 (304)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~ 169 (304)
.+.. .......+.++.+.... ........+ .....+..+++.+.+...+..+.++|+||+++..
T Consensus 91 ~~~~----------~~gi~l~Vfvr~~~~~~v~~v~~~~v~~G---~~g~~gnKG~v~i~~~l~~~~l~fvn~HL~ag~~ 157 (357)
T 2xsw_A 91 SSAA----------HGVLYMSLFIRRDLIWFCSEVECSTVTTR---IVSQIKTKGALGISFTFFGTSFLFITSHFTSGDG 157 (357)
T ss_dssp EEEE----------ETTEEEEEEEEGGGGGGBBCCEEEEEEEE---EEETTEEEEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred EEEE----------ECCEEEEEEEEHHHHHHCCCCCCEEEECC---CCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCC
T ss_conf 9983----------00129999997565522676642367217---7888788853999999998789999996389984
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH----------------HCCCCCCCEEEEECCCCCCCCCCHHH-----------
Q ss_conf 752000025778999999999999986----------------30368980999802688877662046-----------
Q gi|254781003|r 170 LDSLENTYSPSCSLLSQQAQWLKDWIT----------------QKKESLVPFVIAGDFNRKINYLGNND----------- 222 (304)
Q Consensus 170 ~~~~~~~~~~~~~~~~~q~~~l~~~~~----------------~~~~~~~~vIi~GDfN~~~~~~~~~~----------- 222 (304)
.. . .|......+...+. ........+|++||||..+..+....
T Consensus 158 ~~---~-------~R~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~GDlN~Ri~~~~~~~~~~~~~~~~~~ 227 (357)
T 2xsw_A 158 KV---A-------ERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVD 227 (357)
T ss_dssp CH---H-------HHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCC
T ss_pred HH---H-------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCHHH
T ss_conf 17---8-------8888798888751256555421100122222213576257747778676654567999987410213
Q ss_pred --------HHHHHHCCCCCC--------CCCCCCCCCCCCC----CCCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECC
Q ss_conf --------898752255753--------1114456787656----46688820147999862043100247217864113
Q gi|254781003|r 223 --------DFWKTIDPNDSL--------IRFPKEKDSRCNA----NKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNE 282 (304)
Q Consensus 223 --------~~~~~~~~~~~~--------~~~~~~~~~~~~~----~~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~ 282 (304)
.+.........+ .+.+......... ....+-|+.-|+||+...... .+....|..
T Consensus 228 ~~~L~~~dql~~~~~~~~~f~~f~E~~i~F~PTYK~~~~t~~yd~~~k~RiPsWcDRIL~~~~~~~-----~i~~~~Y~s 302 (357)
T 2xsw_A 228 VPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDRVLYRSRHKG-----DICPVSYSS 302 (357)
T ss_dssp HHHHHTTBHHHHHHHHTSSSTTCBCCCCCSCCCBCBCTTSSSBCCSTTCCCCBCCEEEEEEESSTT-----SEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCEEECCCCCCCCCCCEECCCCCCEEEEECCCCC-----CEEEEEEEE
T ss_conf 899999999999851899210453588888886338679985457788448670338997358888-----779999777
Q ss_pred CCCCCCCCCCCCCCCEEEEEE
Q ss_conf 455444555576343899984
Q gi|254781003|r 283 DDIKSRGKRLSDHCPISIDYD 303 (304)
Q Consensus 283 ~~~~~~~~~~SDH~PV~~~l~ 303 (304)
. + ....|||+||++.|+
T Consensus 303 ~--~--~~~~SDH~PV~a~F~ 319 (357)
T 2xsw_A 303 C--P--GIKTSDHRPVYGLFR 319 (357)
T ss_dssp C--T--TCCSSSSCCEEEEEE
T ss_pred C--C--CCCCCCCCCEEEEEE
T ss_conf 7--8--878889801688999
No 26
>3nr8_B Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; structural genomics consortium, SGC, trisphosphate 5-phosphatase 2, SHIP2, INPPL1, SHIP-2; 2.80A {Homo sapiens}
Probab=99.83 E-value=8e-20 Score=125.19 Aligned_cols=170 Identities=17% Similarity=0.133 Sum_probs=77.8
Q ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE--EEEEECCCHH-HHH----HHHCC---CCCEE
Q ss_conf 82699998301478866766677653101889999999998608988--9999507857-999----86033---34307
Q gi|254781003|r 22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADI--VFLQEMGSYN-AVA----KVFPK---NTWCI 91 (304)
Q Consensus 22 ~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DI--i~lQEv~~~~-~~~----~~~~~---~~~~~ 91 (304)
=++-|+||||++..+........... ...+.+..++...+||| |||||+.... .+. +.+.. ..|..
T Consensus 8 l~v~i~TwNvng~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~DI~vi~lQE~k~~~~~~~~~~~~~l~~~~~~~y~~ 83 (316)
T 3nr8_B 8 ISVFIGTWNMGSVPPPKNVTSWFTSK----GLGKTLDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRP 83 (316)
T ss_dssp EEEEEEEECCCSSCCCSCCHHHHTTC----SEEECCC---CCCCCSEEEEEESSCCSCHHHHHHHHHHHHHHHHSSCCEE
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHH----HHCCCHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 17999999559960750256553023----20210555530369984999685598767889999999762125542799
Q ss_pred EEECCCCCCCCCCCCCCCCEEEEEEECCCEE---EEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCC
Q ss_conf 8621455675432234463158998258526---7653012246765555556533699999829949999994067888
Q gi|254781003|r 92 FYSTERLINHSKRDSNNDIHTAIAVRKKNVR---VLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFC 168 (304)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~ 168 (304)
..... ......++.++.+... .........+ .....+..+++.+.+..++..+.++|+|++++.
T Consensus 84 ~~~~~----------~~g~~~~vf~r~~~~~~i~~v~~~~~~~G---~~~~~~nkg~v~i~~~~~~~~i~~vn~hl~~g~ 150 (316)
T 3nr8_B 84 IAMQS----------LWNIKVAVLVKPEHENRISHVSTSSVKTG---IANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGN 150 (316)
T ss_dssp EEEEE----------ETTEEEEEEECGGGGGGEEEEEEEEEECC---------CCEEEEEEEEETTEEEEEEEEECCCST
T ss_pred EEECC----------CCCEEEEEEECCCCCCCCCCCCCCEECCC---CCCCCCCCCEEEEEEEECCEEEEEEEECCCCCC
T ss_conf 76213----------23237999961644564443133212238---887768873399999989988999996566788
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH---------HHHCCCCCCCEEEEECCCCCCCCC
Q ss_conf 77520000257789999999999999---------863036898099980268887766
Q gi|254781003|r 169 FLDSLENTYSPSCSLLSQQAQWLKDW---------ITQKKESLVPFVIAGDFNRKINYL 218 (304)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~q~~~l~~~---------~~~~~~~~~~vIi~GDfN~~~~~~ 218 (304)
.... ++ ..+...+.+. .........++|+|||||..+...
T Consensus 151 ~~~~---~r-------~~~~~~i~~~l~~~~~~~~~~~~~~~~~~vi~~GDlN~r~~~~ 199 (316)
T 3nr8_B 151 EKTA---RR-------NQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMD 199 (316)
T ss_dssp TCHH---HH-------HHHHHHHHHHCCC----CTTTCSSSSSSEEEEEEECCCCBSSC
T ss_pred CCHH---HH-------HHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 6077---78-------8889999996522412212100112458279966520224653
No 27
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*
Probab=40.59 E-value=14 Score=14.65 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=28.2
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CEEEEEE
Q ss_conf 917899999999971587678826999983014788667666776531018899999999986089-8899995
Q gi|254781003|r 1 MIRKYVLALVFFLVPCTASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDA-DIVFLQE 73 (304)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~-DIi~lQE 73 (304)
|.++.+..|++++...+.+.+....|.+ .+.|.+.|...+| |.|.|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------------~~tiq~Ai~~a~PGDtI~l~~ 51 (506)
T 1dbg_A 3 MLNKLAGYLLPIMVLLNVAPCLGQVVAS-------------------------NETLYQVVKEVKPGGLVQIAD 51 (506)
T ss_dssp -----------------------CEECS-------------------------HHHHHHHHHHCCTTCEEEECS
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCC-------------------------HHHHHHHHHCCCCCCEEEECC
T ss_conf 7999999999999873304002587498-------------------------589999997089999999899
No 28
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=36.81 E-value=16 Score=14.31 Aligned_cols=55 Identities=13% Similarity=0.014 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 178999999999715876788269999830147886676667765310188999999999860898899995
Q gi|254781003|r 2 IRKYVLALVFFLVPCTASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQE 73 (304)
Q Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQE 73 (304)
|||.+|+++.+. ..+.+.+.|||.|=.-. ..+..-...|++++.+..++|-+--+
T Consensus 1 m~~~ila~l~~a--~~a~A~~~l~i~tg~~g---------------g~~~~~g~~ia~~~~~~~~gi~~~~~ 55 (314)
T 1us5_A 1 MRKPILAALTLA--GLGLAQEFITIGSGSTT---------------GVYFPVATGIAKLVNDANVGIRANAR 55 (314)
T ss_dssp ------------------CCEEEEEECCCTT---------------SSHHHHHHHHHHHHHHHTSSEEEEEE
T ss_pred CCHHHHHHHHHH--CHHHHCCEEEEEECCCC---------------CCHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 938999999972--43423314899979999---------------71499999999999735898489998
No 29
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=34.68 E-value=17 Score=14.12 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=27.9
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---H--CCCEEEEEECC
Q ss_conf 87678826999983014788667666776531018899999999986---0--89889999507
Q gi|254781003|r 17 TASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKN---L--DADIVFLQEMG 75 (304)
Q Consensus 17 ~~~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~---~--~~DIi~lQEv~ 75 (304)
++--++++||+.-.++.-. ...+.+++.+.+.+.+ . ++|+|+|.|..
T Consensus 4 ~~~~~~~~kiAl~Q~~~~~------------~d~~~N~~~i~~~i~~A~~~~~gadlvvfPE~~ 55 (291)
T 1f89_A 4 SKILSQKIKVALVQLSGSS------------PDKMANLQRAATFIERAMKEQPDTKLVVLPECF 55 (291)
T ss_dssp SSSBSSCEEEEEEECCCCC------------SCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTT
T ss_pred CHHHHCCCEEEEEECCCCC------------CCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 2020067569999575887------------799999999999999998449989899877865
No 30
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=30.87 E-value=20 Score=13.76 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHCCCEEEEEECC
Q ss_conf 9999999986089889999507
Q gi|254781003|r 54 YTLLRQYAKNLDADIVFLQEMG 75 (304)
Q Consensus 54 ~~~l~~~i~~~~~DIi~lQEv~ 75 (304)
...+.+...+.++|||||+|..
T Consensus 101 i~~lI~~Aa~~GadlVvfPEl~ 122 (405)
T 2vhh_A 101 VKTMIKAAAEAGCNIVCTQEAW 122 (405)
T ss_dssp HHHHHHHHHHTTCSEEECCTTT
T ss_pred HHHHHHHHHHCCCEEEECCCCC
T ss_conf 9999999998699199864002
No 31
>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=26.06 E-value=24 Score=13.28 Aligned_cols=51 Identities=18% Similarity=0.060 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHCCC------------CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 917899999999971587------------67882699998301478866766677653101889999999998608988
Q gi|254781003|r 1 MIRKYVLALVFFLVPCTA------------SVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADI 68 (304)
Q Consensus 1 ~~~~~~l~~~~~~~~~~~------------~~~~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DI 68 (304)
|++.+.|.|.+++..++. +...+|+|-||- .+.-++.|.+-..+.+|||
T Consensus 1 ~~~~l~l~l~~~~a~~ala~~~~~~~~~~~~~~~~l~v~s~~-------------------~~~~~~~li~~Fe~~~PgI 61 (355)
T 3c9h_A 1 MRICLFLCLCLCMASPALAQVAVFPALSGKTDAQTLVVYSSL-------------------DEPLATPMIEGFQKANPDI 61 (355)
T ss_dssp ---------------CEEEEEEEECCTTC----CEEEEEECS-------------------CHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECC-------------------CHHHHHHHHHHHHHHCCCC
T ss_conf 907999999999999999888642343567779979999798-------------------8789999999999878893
Q ss_pred EE
Q ss_conf 99
Q gi|254781003|r 69 VF 70 (304)
Q Consensus 69 i~ 70 (304)
=.
T Consensus 62 ~V 63 (355)
T 3c9h_A 62 AV 63 (355)
T ss_dssp EE
T ss_pred EE
T ss_conf 89
Done!