HHSEARCH alignment of GI: 254781003 and SCOP domain: d1sr4b_

Alignment
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]}
Probab=99.93  E-value=2.4e-25  Score=154.09  Aligned_cols=245  Identities=16%  Similarity=0.095  Sum_probs=109.6

Q ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHH----HHHCCCCCE--EEEEC
Q ss_conf             826999983014788667666776531018899999999986089889999507857999----860333430--78621
Q gi|254781003|r   22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVA----KVFPKNTWC--IFYST   95 (304)
Q Consensus        22 ~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~----~~~~~~~~~--~~~~~   95 (304)
                      +.||||||||++++...          ....+...++.++...+|||||||||.......    .+....++.  .+...
T Consensus         3 ~~~rv~TwNi~~~~~~~----------~~~~~~~~~~~~~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (261)
T d1sr4b_           3 SDFKVATWNLQGSSAVN----------ESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWN   72 (261)
T ss_dssp             GGSCEEEEECCCCSSSS----------HHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEE
T ss_pred             CCCEEEEEECCCCCCCC----------CCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             78889999679687875----------55544899999985579998999856754563267998876507651144311


Q ss_pred             CCC-CCCCCCC------CCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCC
Q ss_conf             455-6754322------344631589982585267653012246765555556533699999829949999994067888
Q gi|254781003|r   96 ERL-INHSKRD------SNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFC  168 (304)
Q Consensus        96 ~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~  168 (304)
                      ... .......      .......|.++.++.+.........     .......|.+..+.+    ....++++|+....
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~ls~~~~~~~~~~~~-----~~~~~~~r~~~~~~~----~~~~~~~~~~~~~~  143 (261)
T d1sr4b_          73 LGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHS-----DSSVLQSRPAVGIRI----GTDVFFTVHALATG  143 (261)
T ss_dssp             SSCSSSCCEEEEEEECCCTTTSCSCEEEEESSCCSEEEEECC-----CCCSSCCCCEEEEEE----TTEEEEEEECCTTT
T ss_pred             CCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCEECCC-----CCCCCCCCEEEEEEE----ECCCCEEEEEEECC
T ss_conf             466667753689950443345301259996887501045368-----876666522799998----41551479996147


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77520000257789999999999999863036898099980268887766204689875225575311144567876564
Q gi|254781003|r  169 FLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNAN  248 (304)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (304)
                      .....        .....+...+..........+.|+|+|||||..+.+..     ...+..... ......... ..  
T Consensus       144 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~~~-----~~~~~~~~~-~~~~~~~~~-~~--  206 (261)
T d1sr4b_         144 GSDAV--------SLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPANLE-----VALRQEPAV-SENTIIIAP-TE--  206 (261)
T ss_dssp             TTTHH--------HHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHHHH-----HHHTTSHHH-HHTCEEECC-SS--
T ss_pred             CCCCH--------HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH-----HHHHHHHCC-CCCEECCCC-CC--
T ss_conf             75127--------99999999999999986356997799633276764088-----887664102-221001589-98--


Q ss_pred             CCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             6688820147999862043100247217864113455444555576343899984
Q gi|254781003|r  249 KNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD  303 (304)
Q Consensus       249 ~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~  303 (304)
                      .+.....+|||||+++................ ..........+|||+||..-++
T Consensus       207 ~t~~~~~~iD~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~SDH~PV~f~~~  260 (261)
T d1sr4b_         207 PTHRSGNILDYAILHDAHLPRREQARERIGAS-LMLNQLRSQITSDHFPVSFVRD  260 (261)
T ss_dssp             CSBTTSCCCEEEEEECTTSCTTCGGGCCEEEE-ECGGGCSSCCSSSBCCEEEEEC
T ss_pred             CCCCCCCEECEEEECCCCCCEEEECCCCEEEE-EECCCCCCCCCCCCCCEEEEEC
T ss_conf             96898980366996680003254044110235-5202357996177841089868


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Cytolethal distending toxin subunit B
species: Haemophilus ducreyi [TaxId: 730]