HHSEARCH alignment of GI: 254781003 and SCOP domain: d1wdua_

Alignment
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Probab=99.93  E-value=1.3e-23  Score=144.60  Aligned_cols=218  Identities=16%  Similarity=0.122  Sum_probs=111.6

Q ss_pred             CEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             26999983014788667666776531018899999999986089889999507857999860333430786214556754
Q gi|254781003|r   23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHS  102 (304)
Q Consensus        23 ~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (304)
                      +|||||||++.                ...+.+.+...+...+|||+||||+..... .......++..+.....     
T Consensus         2 p~rV~~~Nv~~----------------~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~-~~~~~~~~~~~~~~~~~-----   59 (228)
T d1wdua_           2 PYRVLQANLQR----------------KKLATAELAIEAATRKAAIALIQEPYVGGA-KSMKGFRGVRVFQSTAQ-----   59 (228)
T ss_dssp             CEEEEEEECTT----------------CHHHHHHHHHHHHHHTCSEEEEESCCC-------CCCSSCEEEECCCC-----
T ss_pred             CEEEEEECCCC----------------CHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCCCCCCEEEEECCCC-----
T ss_conf             87899420399----------------767899999999736997899987874898-85311362378834577-----


Q ss_pred             CCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf             32234463158998258526765301224676555555653369999982994999999406788877520000257789
Q gi|254781003|r  103 KRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCS  182 (304)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~~~~~~~~~~~~~~~  182 (304)
                         .....+.++.++.+.......  +..         ..+....+.+..++..++++++|++++...+           
T Consensus        60 ---~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~~-----------  114 (228)
T d1wdua_          60 ---GDGTVKAAIAVFDHDLDVIQY--PQL---------TTNNIVVVGIRTRAWEITLVSYYFEPDKPIE-----------  114 (228)
T ss_dssp             ---TTCCCCEEEEECCSSCEEEEC--TTT---------CCSSEEEEEEECSSCEEEEEEEECCTTSCSH-----------
T ss_pred             ---CCCCCCEEEEEECCCCCEECC--CCC---------CCCCEEEEEEECCCCCEEEEEEEECCCCCCH-----------
T ss_conf             ---898762599998146404504--677---------8899799999828802899999818743106-----------


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC------CHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf             999999999999863036898099980268887766------204689875225575311144567876-5646688820
Q gi|254781003|r  183 LLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYL------GNNDDFWKTIDPNDSLIRFPKEKDSRC-NANKNLRNKI  255 (304)
Q Consensus       183 ~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  255 (304)
                      .   ..+.+...+..  ....++|+|||||.....-      .....+...+... ............+ ..........
T Consensus       115 ~---~~~~l~~~~~~--~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  188 (228)
T d1wdua_         115 S---YLEQIKRVERK--MGPKRLIFGGDANAKSTWWGSKEDDARGDQLMGTLGEL-GLHILNEGDVPTFDTIRGGKRYQS  188 (228)
T ss_dssp             H---HHHHHHHHHHT--TCSSSEEEEEECCCCCGGGTCSSCCHHHHHHHHHHHHH-TCEECCCSCCCSEEC-----CCEE
T ss_pred             H---HHHHHHHHHHH--CCCCEEEEECCCCCCCHHHHCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             8---99999999874--58953999225355756673243205789999999860-753112577322003567878885


Q ss_pred             CEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             1479998620431002472178641134554445555763438999849
Q gi|254781003|r  256 PIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYDF  304 (304)
Q Consensus       256 ~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~l~f  304 (304)
                      ||||+|+++.+.......  .+       .  .....|||.||+++|+.
T Consensus       189 rID~~~~s~~l~~~v~~~--~v-------~--~~~~~SDH~~v~~~l~~  226 (228)
T d1wdua_         189 RVDVTFCTEDMLDLIDGW--RV-------D--EDLVSSDHNGMVFNIRL  226 (228)
T ss_dssp             CCEEEEECGGGBTTEEEE--EE-------C--TTSSSSSBCCEEEEECC
T ss_pred             CEEEEEECCHHHHHCEEE--EE-------C--CCCCCCCCHHEEEEEEE
T ss_conf             448999780586213599--99-------8--99999993576999997


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Endonuclease domain of TRAS1 retrotransposon (ORF2)
species: Silkworm (Bombyx mori) [TaxId: 7091]