HHSEARCH alignment of GI: 254781003 and SCOP domain: d2a40b1

Alignment
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.97  E-value=4.2e-29  Score=174.56  Aligned_cols=246  Identities=15%  Similarity=0.123  Sum_probs=120.5

Q ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCH--HHHHHHHCC----CC--CEEEEEC
Q ss_conf             699998301478866766677653101889999999998608988999950785--799986033----34--3078621
Q gi|254781003|r   24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSY--NAVAKVFPK----NT--WCIFYST   95 (304)
Q Consensus        24 lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~--~~~~~~~~~----~~--~~~~~~~   95 (304)
                      ||||||||++|+..         ..+....++.|++++  .+|||||||||.+.  ..+..++..    ..  +......
T Consensus         1 lrI~s~Ni~~~~~~---------~~~~~~~~~~l~~~i--~~~DIi~LQEv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   69 (260)
T d2a40b1           1 LKIAAFNIRTFGET---------KMSNATLASYIVRIV--RRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYHYVVSE   69 (260)
T ss_dssp             CEEEEEEEEEESHH---------HHHSHHHHHHHHHHH--TTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCEEEECC
T ss_pred             CEEEEEECCCCCCC---------CCCCHHHHHHHHHHC--CCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             98999968834778---------666599999999874--7999899996234774169999986431146750367415


Q ss_pred             CCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEE---ECCEEEEEEEECCCCCCCCCC
Q ss_conf             45567543223446315899825852676530122467655555565336999998---299499999940678887752
Q gi|254781003|r   96 ERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVE---INGKKIWVLDIHLKSFCFLDS  172 (304)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~~~v~n~Hl~~~~~~~~  172 (304)
                      ...      ........+...+.........................+........   .....+.+.+.|+....    
T Consensus        70 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  139 (260)
T d2a40b1          70 PLG------RNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSD----  139 (260)
T ss_dssp             CBC------SSSCCBEEEEEECTTTCEEEEEEECCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGG----
T ss_pred             CCC------CCCCCCCEEEEECCCCCCEECCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEECCCCCH----
T ss_conf             677------7754310025412544201112000135556765433323102121103456247999864155430----


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00002577899999999999998630368980999802688877662046898752255753111445678765646688
Q gi|254781003|r  173 LENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLR  252 (304)
Q Consensus       173 ~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (304)
                              ...+..|...+.+++.+. ..+.++|+|||||..+...................    ........+.....
T Consensus       140 --------~~~~~~~~~~~~~~~~~~-~~~~~~iv~GDfN~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  206 (260)
T d2a40b1         140 --------AVAEINSLYDVYLDVQQK-WHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTF----QWLIPDSADTTATS  206 (260)
T ss_dssp             --------HHHHHHHHHHHHHHHHHH-HCCCCEEEEEECCCSTTTSCGGGGGGCHHHHSTTE----EESSCTTCCCBSSS
T ss_pred             --------HHHHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCCCCHHHHHHHHHCCCCCCCC----CCCCCCCCCCCCCC
T ss_conf             --------368888899999999863-45788797665567865234555544143222111----12678887633479


Q ss_pred             CCCCEEEEEECCCHHHCCC-CCCEEEEEECCCC--CCCCCCCCCCCCCEEEEEE
Q ss_conf             8201479998620431002-4721786411345--5444555576343899984
Q gi|254781003|r  253 NKIPIDYFVMDQNAYKFLI-QESFSEILYNEDD--IKSRGKRLSDHCPISIDYD  303 (304)
Q Consensus       253 ~~~~iD~I~~s~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~SDH~PV~~~l~  303 (304)
                      ...+|||||++++...... .....+..+....  .......+|||+||+++|+
T Consensus       207 ~~~~iD~i~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~v~ls  260 (260)
T d2a40b1         207 TNCAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT  260 (260)
T ss_dssp             CCCCCEEEEEESHHHHHHBCTTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEBC
T ss_pred             CCCCEEEEEECCHHHCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             998556899684461542632501442023212556335798077426799959


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Deoxyribonuclease I
species: Cow (Bos taurus) [TaxId: 9913]