HHSEARCH alignment of GI: 254781003 and SCOP domain: d2f1na1

Alignment
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]}
Probab=99.95  E-value=3.9e-28  Score=169.26  Aligned_cols=234  Identities=15%  Similarity=0.077  Sum_probs=104.8

Q ss_pred             CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHH----HCCCCCE--EEEEC
Q ss_conf             82699998301478866766677653101889999999998608988999950785799986----0333430--78621
Q gi|254781003|r   22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKV----FPKNTWC--IFYST   95 (304)
Q Consensus        22 ~~lrV~twNi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~DIi~lQEv~~~~~~~~~----~~~~~~~--~~~~~   95 (304)
                      ..||||||||+++....        ..++..  .....++...+|||||||||++.......    +...++.  .+...
T Consensus         3 ~~~rv~TwNi~~~~~~~--------~~~~~~--~~~~~~~~~~~~DVl~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (250)
T d2f1na1           3 TDFRVATWNLQGASATT--------ESKWNI--NVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWN   72 (250)
T ss_dssp             GGCCEEEEEEEECTTSC--------HHHHHT--HHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEE
T ss_pred             CCCEEEEEECCCCCCCC--------CCCCHH--HHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf             78899999479775765--------565559--99999986689899999826863343366765443027642002321


Q ss_pred             CCCC-CCCC--C----CCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCC
Q ss_conf             4556-7543--2----2344631589982585267653012246765555556533699999829949999994067888
Q gi|254781003|r   96 ERLI-NHSK--R----DSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFC  168 (304)
Q Consensus        96 ~~~~-~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~n~Hl~~~~  168 (304)
                      .... ....  .    ........+.++.++.+.......+       ......|..+.+.+    ..+.++|+|+++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~s~~~~~~~~~~~-------~~~~~~r~~~~~~~----~~~~v~n~Hl~~~~  141 (250)
T d2f1na1          73 LSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLS-------PVRQGGRPLLGIRI----GNDAFFTAHAIAMR  141 (250)
T ss_dssp             CCSSSSSCEEEEEEECSCSSSCSSCEEEEESSCCSEEEEEC-------CSSTTCCCEEEEEE----TTEEEEEEECCSSS
T ss_pred             CCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEEEECC-------CCCCCCCCEEEEEE----CEEEEEEEECCCCC
T ss_conf             34456763267875114544657145999887530567517-------87542211036763----20899999818999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             77520000257789999999999999863036898099980268887766204689875225575311144567876564
Q gi|254781003|r  169 FLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNAN  248 (304)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~vIi~GDfN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (304)
                      ..+.         ..+..++..+.+.+........++|+|||||..+.......  ...+      .........+.   
T Consensus       142 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~iv~GDfN~~p~~~~~~~--~~~~------~~~~~~~~~~~---  201 (250)
T d2f1na1         142 NNDA---------PALVEEVYNFFRDSRDPVHQALNWMILGDFNREPADLEMNL--TVPV------RRASEIISPAA---  201 (250)
T ss_dssp             SCSH---------HHHHHHHHHHHHTCSSHHHHTCEEEEEEECSSCHHHHHTTS--CHHH------HHTEEEECCSS---
T ss_pred             CHHH---------HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH--HCCC------CCEEEECCCCC---
T ss_conf             5659---------99999999999998764146886687345576871255554--2011------22123218798---


Q ss_pred             CCCCCCCCEEEEEECCCHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEE
Q ss_conf             66888201479998620431002472178641134554445555763438999
Q gi|254781003|r  249 KNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISID  301 (304)
Q Consensus       249 ~~~~~~~~iD~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~  301 (304)
                      .+.....+|||||+++++.......  ...  . .........+|||+||.+.
T Consensus       202 ~t~~~~~riD~i~~s~~~~~~~~~~--~~~--~-~~~~~~~~~~SDH~PV~~~  249 (250)
T d2f1na1         202 ATQTSQRTLDYAVAGNSVAFRPSPL--QAG--I-VYGARRTQISSDHFPVGVS  249 (250)
T ss_dssp             CSBTTSCCCEEEEEEESSCCCCCCC--EEE--E-TTTTSCCCCSCSBCCEEEE
T ss_pred             CCCCCCCCEEEEEEECHHHCCCCEE--EEE--E-ECCCCCCCCCCCCCCEEEE
T ss_conf             8657999579999826686264136--788--7-5143589971884255876


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Cytolethal distending toxin subunit B
species: Escherichia coli [TaxId: 562]