PSIBLAST alignment of GI: 254781003 and protein with PDB id: 1vyb
>gi|49259594|pdb|1VYB|A Chain A, Endonuclease Domain Of Human Line1 Orf2p Length = 238
>gi|49259595|pdb|1VYB|B Chain B, Endonuclease Domain Of Human Line1 Orf2p Length = 238
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/292 (10%), Positives = 71/292 (24%), Gaps = 75/292 (25%)
Query: 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKV 83
+ +++ NIN L+ + L + K+ D + +QE
Sbjct: 8 ITILTLNINGLN--------------SAIKRHRLASWIKSQDPSVCCIQET--------- 44
Query: 84 FPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNR 143
+ + + +A+
Sbjct: 45 -HLTCRDTHRLKIKGWRKIYQANGKQKKAGVAIL-------VSDKTDFKPTKIKRDKEGH 96
Query: 144 RAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLV 203
+ + I +++ +L+I+ + + Q L+ +
Sbjct: 97 YIM-VKGSIQQEELTILNIYAPNTGAP-----------RFIKQVLSDLQRDLDSH----- 139
Query: 204 PFVIAGDFNRKI-------------NYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKN 250
+I GDFN + + N + + PK + + +
Sbjct: 140 -TLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPH 198
Query: 251 LRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
ID+ V + + LSDH I ++
Sbjct: 199 HTY-SKIDHIVGSKALLSKCKRTEIIT------------NYLSDHSAIKLEL 237