PSIBLAST alignment of GI: 254781003 and protein with PDB id: 2jc4
gi|134104765|pdb|2JC4|A Chain A, 3'-5' Exonuclease (Nexo) From Neisseria Meningitidis Length = 256
Score = 100 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/305 (12%), Positives = 88/305 (28%), Gaps = 73/305 (23%)
Query: 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKV 83
+++ +WN+N+L+ ++ + DI+ LQE
Sbjct: 1 MKITTWNVNSLN----------------VRLPQVQNLLADNPPDILVLQE---------- 34
Query: 84 FPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNR 143
+ + +++ S + +A+ ++V + R
Sbjct: 35 LKLDQDKFPAAALQMMGWHCVWSGQKTYNGVAIVSRSVPQDVHF-----GLPALPDDPQR 89
Query: 144 RAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLV 203
R + V + V++++ + LDS + Y Q L +++ +
Sbjct: 90 RVIAATVS----GVRVINVYCVNGEALDSPKFKYKE------QWFAALTEFVRDEMTRHG 139
Query: 204 PFVIAGDFNRKINYLGNNDD---------------FWKTIDPNDSLIRFPKEKDSRCNAN 248
V+ GDFN D +++ + +
Sbjct: 140 KLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAF-Y 198
Query: 249 KNLRNKI---------PIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPIS 299
+ ID+ ++ L D +R SDH P++
Sbjct: 199 TWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDV-------RVDLETRALERPSDHAPVT 251
Query: 300 IDYDF 304
++D+
Sbjct: 252 AEFDW 256