PSIBLAST alignment of GI: 254781003 and protein with PDB id: 2jc5
gi|157883966|pdb|2JC5|A Chain A, Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From Neisseria Meningitidis Length = 259
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/305 (12%), Positives = 81/305 (26%), Gaps = 74/305 (24%)
Query: 24 VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKV 83
++++S N+N + + +Y ADIV +QE+ + A
Sbjct: 2 LKIISANVNGIRSAYKKGFY---------------EYIAASGADIVCVQELKAQEADLSA 46
Query: 84 FPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNR 143
KN + ++ +AV K +G R
Sbjct: 47 DMKNPHGMHGHWHCAEKRG--------YSGVAVYSKRKP----DNVQIGMGIEEFDREGR 94
Query: 144 RAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLV 203
V + ++ V+ ++L S + + + + + K
Sbjct: 95 F-----VRCDFGRLSVISLYLPSGSSAEERQ-------QVKYRFLDAFYPMLEAMKNEGR 142
Query: 204 PFVIAGDFNRKINYLGNNDDFWKTIDPN---------------DSLIRFPKEKDSRCNAN 248
V+ GD+N + + + +
Sbjct: 143 DIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGY 202
Query: 249 KNLRNK---------IPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPIS 299
N+ IDY ++ + + ++ SDH P+
Sbjct: 203 TWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAHV-----------YKDEKFSDHAPLV 251
Query: 300 IDYDF 304
++YD+
Sbjct: 252 VEYDY 256