RPSBLAST alignment of GI: 254781003 and protein with PDBid: 1ako
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Length = 268
Score = 41.3 bits (95), Expect = 3e-04
Identities = 39/294 (13%), Positives = 87/294 (29%), Gaps = 45/294 (15%)
Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQE----------- 73
+ VS+NIN G+ + ++ + D++ LQE
Sbjct: 2 KFVSFNIN------GLRARPHQLE----------AIVEKHQPDVIGLQETKVHDDMFPLE 45
Query: 74 ---MGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPL 130
YN + + E I + +D + + L + +
Sbjct: 46 EVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTV 105
Query: 131 LGAKDSFSRAGNRRAVELLVEINGKKI--WVLDIHLKSFCFLDSLENTYSPSCSLLSQQA 188
+ + + + + ++ + L + SP+ +
Sbjct: 106 INGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGE 165
Query: 189 QWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNAN 248
+ K W+ K S +P ++ ++ G D F + + + N
Sbjct: 166 ENRKRWLRTGKCSFLPEER--EWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDN 223
Query: 249 KNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
+ LR ID + Q + ++ + I Y ++ SDH P+ +
Sbjct: 224 RGLR----IDLLLASQPLAECCVE---TGIDYEIRS----MEKPSDHAPVWATF 266