RPSBLAST alignment of GI: 254781003 and protein with PDBid: 1ako

>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Length = 268
 Score = 41.3 bits (95), Expect = 3e-04
 Identities = 39/294 (13%), Positives = 87/294 (29%), Gaps = 45/294 (15%)

Query: 25  RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQE----------- 73
           + VS+NIN      G+    + ++             +    D++ LQE           
Sbjct: 2   KFVSFNIN------GLRARPHQLE----------AIVEKHQPDVIGLQETKVHDDMFPLE 45

Query: 74  ---MGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPL 130
                 YN        +      + E  I   +    +D      +    +  L  +  +
Sbjct: 46  EVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTV 105

Query: 131 LGAKDSFSRAGNRRAVELLVEINGKKI--WVLDIHLKSFCFLDSLENTYSPSCSLLSQQA 188
           +        + +            + +  ++     +    L   +   SP+   +    
Sbjct: 106 INGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGE 165

Query: 189 QWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNAN 248
           +  K W+   K S +P     ++  ++   G  D F            +   +    + N
Sbjct: 166 ENRKRWLRTGKCSFLPEER--EWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDN 223

Query: 249 KNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
           + LR    ID  +  Q   +  ++   + I Y         ++ SDH P+   +
Sbjct: 224 RGLR----IDLLLASQPLAECCVE---TGIDYEIRS----MEKPSDHAPVWATF 266