RPSBLAST alignment of GI: 254781003 and protein with PDBid: 2ei9
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Length = 240
Score = 38.4 bits (88), Expect = 0.002
Identities = 27/280 (9%), Positives = 61/280 (21%), Gaps = 69/280 (24%)
Query: 22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVA 81
++R+ N+ L A++L DIV +QE
Sbjct: 6 PRLRIGQINLGGAE----------------DATRELPSIARDLGLDIVLVQE-------- 41
Query: 82 KVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAG 141
+ + + H K + +R + +
Sbjct: 42 ------QYSMVGFLAQCGAHPK--------AGVYIRNRVLPCAVL-----------HHLS 76
Query: 142 NRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKES 201
+ +V I G ++++ + + +D + L +
Sbjct: 77 STHIT--VVHIGGWDLYMVSAYFQYSDPIDPYLHRLGNILDRLRGARVVICADTNAHSPL 134
Query: 202 LVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYFV 261
+ D K D + D + +D +
Sbjct: 135 WHSL----PRHYVGRGQEVADRRAKMEDFIGARRLVVHNADGHLPTFSTANGESYVDVTL 190
Query: 262 MDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISID 301
+ + + + SDH I
Sbjct: 191 STRGV--------------RVSEWRVTNESSSDHRLIVFG 216