RPSBLAST alignment of GI: 254781003 and protein with PDBid: 2f1n

>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Length = 262

 Score = 65.9 bits (159), Expect = 1e-11
 Identities = 43/284 (15%), Positives = 79/284 (27%), Gaps = 37/284 (13%)

Query: 21  AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAV 80
               R+ +WN+             ++   +  +  + +  +     DI+ +QE GS  + 
Sbjct: 13  LTDFRVATWNLQ----------GASATTESKWNINVRQLISGENAVDILAVQEAGSPPST 62

Query: 81  AKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAI--AVRKKNVRVLQQSYPLLGAKDSFS 138
           A    +           LI +   +S          AV     RV         A + F 
Sbjct: 63  AVDTGRVIPSPGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFV 122

Query: 139 RAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQK 198
            +  R+    L+ I          H  +    D+           L ++           
Sbjct: 123 LSPVRQGGRPLLGIRIGNDAFFTAHAIAMRNNDAPA---------LVEEVYNFFRDSRDP 173

Query: 199 KESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPID 258
               + ++I GDFNR+   L  N                  +   R            +D
Sbjct: 174 VHQALNWMILGDFNREPADLEMNLTVPVRRASEIISPAAATQTSQRT-----------LD 222

Query: 259 YFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
           Y V   +     +    S +         R +  SDH P+ +  
Sbjct: 223 YAVAGNS-----VAFRPSPLQAGIVYGARRTQISSDHFPVGVSR 261