RPSBLAST alignment of GI: 254781003 and protein with PDBid: 3i41

>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus RN4220} PDB: 3i46_A 3i48_A Length = 317

 Score = 78.9 bits (193), Expect = 1e-15
 Identities = 58/313 (18%), Positives = 91/313 (29%), Gaps = 39/313 (12%)

Query: 13  LVPCTASVAQK-----VRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDAD 67
           LVP  + +  K     ++LVS N+  LS     +  +           L+ Q +   + D
Sbjct: 14  LVPRGSHMESKKDDTDLKLVSHNVYMLSTVLYPNWGQYKRAD------LIGQSSYIKNND 67

Query: 68  IVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSN----------NDIHTAIAVR 117
           +V   E     A  K+         Y T  L                    D   AI  +
Sbjct: 68  VVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSK 127

Query: 118 KKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTY 177
                 +Q  +      D+ S   N+  V   +E NGK + V+  H +S        +  
Sbjct: 128 YPIKEKIQHVFKSGCGFDNDS---NKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDR 184

Query: 178 SPSCSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRF 237
                   Q  +       +         I GD N          D  K ++ ND L   
Sbjct: 185 KIRA---EQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPE-FKDMLKNLNVNDVLYAG 240

Query: 238 PKEKDSRCN---ANKNLRNKIP--IDYFVMDQNAYK------FLIQESFSEILYNEDDIK 286
                   +   A  N  N  P  +DY   D++  +       ++ E             
Sbjct: 241 HNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAAAYY 300

Query: 287 SRGKRLSDHCPIS 299
                 SDH PI 
Sbjct: 301 YVYNDFSDHYPIK 313