RPSBLAST alignment of GI: 254781003 and SCOP domain: d1akoa_

Alignment

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 38/297 (12%), Positives = 77/297 (25%), Gaps = 51/297 (17%)

Query: 25  RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84
           + VS+NIN      G+    + ++             +    D++ LQE         +F
Sbjct: 2   KFVSFNIN------GLRARPHQLE----------AIVEKHQPDVIGLQE---TKVHDDMF 42

Query: 85  PKN-TWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNR 143
           P      + Y+                       ++      +                 
Sbjct: 43  PLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGN 102

Query: 144 RAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSL------------------LS 185
             V       G+             F  +L+N                          + 
Sbjct: 103 VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIG 162

Query: 186 QQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRC 245
              +  K W+   K S +P     ++  ++   G  D F            +   +    
Sbjct: 163 IGEENRKRWLRTGKCSFLPEER--EWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGF 220

Query: 246 NANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
           + N+ LR    ID  +  Q   +  ++   + I Y         ++ SDH P+   +
Sbjct: 221 DDNRGLR----IDLLLASQPLAECCVE---TGIDYEIRS----MEKPSDHAPVWATF 266

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA-repair enzyme exonuclease III
species: Escherichia coli [TaxId: 562]