RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781003|ref|YP_003065416.1| hypothetical protein
CLIBASIA_04520 [Candidatus Liberibacter asiaticus str. psy62]
         (304 letters)



>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
           {Escherichia coli [TaxId: 562]}
          Length = 250

 Score = 59.3 bits (142), Expect = 4e-10
 Identities = 42/280 (15%), Positives = 82/280 (29%), Gaps = 37/280 (13%)

Query: 23  KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
             R+ +WN+             ++   +  +  + +  +     DI+ +QE GS  + A 
Sbjct: 4   DFRVATWNLQ----------GASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAV 53

Query: 83  VFPKNTWCIFYSTERLINHSKRDSNNDIHTAI--AVRKKNVRVLQQSYPLLGAKDSFSRA 140
              +           LI +   +S          AV     RV         A + F  +
Sbjct: 54  DTGRVIPSPGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLS 113

Query: 141 GNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKE 200
             R+    L+ I          H  +    D+           L ++             
Sbjct: 114 PVRQGGRPLLGIRIGNDAFFTAHAIAMRNNDAPA---------LVEEVYNFFRDSRDPVH 164

Query: 201 SLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYF 260
             + ++I GDFNR+   L  N           +         ++        ++  +DY 
Sbjct: 165 QALNWMILGDFNREPADLEMNLTVPVR----RASEIISPAAATQ-------TSQRTLDYA 213

Query: 261 VMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISI 300
           V   +     +    S +         R +  SDH P+ +
Sbjct: 214 VAGNS-----VAFRPSPLQAGIVYGARRTQISSDHFPVGV 248


>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
           {Bacillus cereus [TaxId: 1396]}
          Length = 299

 Score = 58.5 bits (139), Expect = 6e-10
 Identities = 39/309 (12%), Positives = 90/309 (29%), Gaps = 39/309 (12%)

Query: 23  KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
            +++++ N+  LS     +  +           L+       + D+V L E+   +A  +
Sbjct: 3   TLKVMTHNVYMLSTNLYPNWGQTERAD------LIGAADYIKNQDVVILNEVFDNSASDR 56

Query: 83  VFPKNTWCIFYSTERLINHSKRDSN-----------NDIHTAIAVRKKNVRVLQQSYPLL 131
           +           T  L   S  + +            D   AI  +      +Q  +   
Sbjct: 57  LLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKG 116

Query: 132 GAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWL 191
              D+ S    +  V   ++ N + + V+  HL++   +    +         +Q  +  
Sbjct: 117 CGPDNLSN---KGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPA---SVRTNQLKEIQ 170

Query: 192 KDWITQKKESLVPFVIAGDFN--------RKINYLGNNDDFWKTIDPNDSLIRFPKEKDS 243
                +   +    +I GD N           +   +         P+ +      +  +
Sbjct: 171 DFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWDATT 230

Query: 244 RCNANKNLRNKIP--IDYFVMDQNAYK------FLIQESFSEILYNEDDIKSRGKRLSDH 295
              A  N  +     +DY +  ++          ++Q    +        K      SDH
Sbjct: 231 NSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDH 290

Query: 296 CPISIDYDF 304
            P+      
Sbjct: 291 YPVEATISM 299


>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C
           {Listeria ivanovii [TaxId: 1638]}
          Length = 293

 Score = 56.5 bits (134), Expect = 3e-09
 Identities = 37/302 (12%), Positives = 85/302 (28%), Gaps = 29/302 (9%)

Query: 21  AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAV 80
               ++ S N+   S    +      + R      L+ Q     + D+V L E    +A 
Sbjct: 2   PGNFKITSHNVYLFSRN--IYPNWGQMHR----ADLIAQADYMKNNDVVILNEAFDTSAS 55

Query: 81  AKVFPKNTWCIFYSTERLINH--------SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLG 132
            ++         + T  +               +       +AV  +   V +  +    
Sbjct: 56  HRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQR 115

Query: 133 AKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLK 192
              +  R  N+    + +  NGK   ++  H ++   L S + +         Q  +   
Sbjct: 116 GGGAD-RLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSR---AIRAEQMQEIQT 171

Query: 193 DWITQKKESLVPFVIAGDFN-----RKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNA 247
               +         I GD N      + + +    +     + N  +  +    +S    
Sbjct: 172 FIAKKNIPKDEIIFIGGDLNVNYGTDEYHDMLKLLNVSSPANFNGQMATWDPTTNSMLKE 231

Query: 248 NKNLRNKIPIDYFVMDQNAYK------FLIQESFSEILYNEDDIKSRGKRLSDHCPISID 301
           +        +DY  ++    +       ++     +            +  SDH P+   
Sbjct: 232 SYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGF 291

Query: 302 YD 303
            D
Sbjct: 292 TD 293


>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 275

 Score = 51.6 bits (122), Expect = 7e-08
 Identities = 35/288 (12%), Positives = 76/288 (26%), Gaps = 42/288 (14%)

Query: 25  RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84
           ++ SWN++ L         +  +K+          + K    DI+ LQE           
Sbjct: 20  KICSWNVDGL---------RAWIKK------KGLDWVKEEAPDILCLQET---KCSENKL 61

Query: 85  PKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRR 144
           P     +   + +  +             ++ +                +     A    
Sbjct: 62  PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDS 121

Query: 145 AVELLVEINGKKIWVLDIHLKSFCFLDSL---------ENTYSPSCSLLSQQAQWLKDWI 195
            V +   +      ++ +  +                 +         ++ +   L++  
Sbjct: 122 FVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK 181

Query: 196 TQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKI 255
             KK +         F   +  +   D F            F     +  + N   R   
Sbjct: 182 GNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWR--- 238

Query: 256 PIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303
            +DYF++  +    L     S+I              SDHCPI++   
Sbjct: 239 -LDYFLLSHSLLPALCD---SKIRSKA--------LGSDHCPITLYLA 274


>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 260

 Score = 50.0 bits (117), Expect = 2e-07
 Identities = 41/283 (14%), Positives = 83/283 (29%), Gaps = 32/283 (11%)

Query: 25  RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNL-DADIVFLQEM--GSYNAVA 81
           ++ ++NI T              +   S+ TL     + +   DIV +QE+      AV 
Sbjct: 2   KIAAFNIRTFG------------ETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVG 49

Query: 82  KVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAG 141
           K+          +   +++     ++         R   V VL       G +   + + 
Sbjct: 50  KLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSF 109

Query: 142 NRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKES 201
           +R    +    +  K+    I                            +   + Q+K  
Sbjct: 110 SREPAVVKFSSHSTKVKEFAIVALHSAP---------SDAVAEINSLYDVYLDV-QQKWH 159

Query: 202 LVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYFV 261
           L   ++ GDFN   +Y+      W +I    S        DS      +       D  V
Sbjct: 160 LNDVMLMGDFNADCSYV--TSSQWSSIRLRTSSTFQWLIPDSADTTATSTNC--AYDRIV 215

Query: 262 MDQNAYKFLIQESFSEILYNEDDIKS---RGKRLSDHCPISID 301
           +  +  +  +    +     +            +SDH P+ + 
Sbjct: 216 VAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVT 258


>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B
           {Haemophilus ducreyi [TaxId: 730]}
          Length = 261

 Score = 49.5 bits (116), Expect = 3e-07
 Identities = 35/288 (12%), Positives = 86/288 (29%), Gaps = 36/288 (12%)

Query: 22  QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNA-- 79
              ++ +WN+             ++V  +  +  + +  +    ADI+ +QE GS  +  
Sbjct: 3   SDFKVATWNLQ----------GSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSA 52

Query: 80  --VAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKK--NVRVLQQSYPLLGAKD 135
              ++V       I   T  L   S+ +     ++ + V     N+ ++ +         
Sbjct: 53  VRTSRVIQHGGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIV 112

Query: 136 SFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWI 195
               +  +    + + I         +H  +    D++                      
Sbjct: 113 HSDSSVLQSRPAVGIRIGT--DVFFTVHALATGGSDAVSLIR--------NIFTTFNSSS 162

Query: 196 TQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKI 255
           +  +  +  +++ GDFNR        +                    +            
Sbjct: 163 SPPERRVYSWMVVGDFNR-----APANLEVALRQEPAVSENTIIIAPTEPTHRSGNI--- 214

Query: 256 PIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303
            +DY ++         +++   I  +    + R +  SDH P+S   D
Sbjct: 215 -LDYAILHDAHLPR-REQARERIGASLMLNQLRSQITSDHFPVSFVRD 260


>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon
           (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
          Length = 228

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 34/285 (11%), Positives = 67/285 (23%), Gaps = 69/285 (24%)

Query: 25  RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84
           R++  N+                 R       L   A    A I  +QE   Y   AK  
Sbjct: 4   RVLQANLQ----------------RKKLATAELAIEAATRKAAIALIQEP--YVGGAKSM 45

Query: 85  PKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRR 144
                   +        S    +  +  AIAV   ++ V+Q                   
Sbjct: 46  KGFRGVRVF-------QSTAQGDGTVKAAIAVFDHDLDVIQYPQL-----------TTNN 87

Query: 145 AVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVP 204
            V + +     +I ++  + +    ++S           +  +                 
Sbjct: 88  IVVVGIRTRAWEITLVSYYFEPDKPIESYLEQIKRVERKMGPK----------------R 131

Query: 205 FVIAGDFNRK------INYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPID 258
            +  GD N K             D    T+      I    +  +        R +  +D
Sbjct: 132 LIFGGDANAKSTWWGSKEDDARGDQLMGTLGELGLHILNEGDVPTFDTIRGGKRYQSRVD 191

Query: 259 YFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303
                ++    +       +              SDH  +  +  
Sbjct: 192 VTFCTEDMLDLIDG---WRVD--------EDLVSSDHNGMVFNIR 225


>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III
           {Escherichia coli [TaxId: 562]}
          Length = 268

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 38/297 (12%), Positives = 77/297 (25%), Gaps = 51/297 (17%)

Query: 25  RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84
           + VS+NIN      G+    + ++             +    D++ LQE         +F
Sbjct: 2   KFVSFNIN------GLRARPHQLE----------AIVEKHQPDVIGLQE---TKVHDDMF 42

Query: 85  PKN-TWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNR 143
           P      + Y+                       ++      +                 
Sbjct: 43  PLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGN 102

Query: 144 RAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSL------------------LS 185
             V       G+             F  +L+N                          + 
Sbjct: 103 VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIG 162

Query: 186 QQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRC 245
              +  K W+   K S +P     ++  ++   G  D F            +   +    
Sbjct: 163 IGEENRKRWLRTGKCSFLPEER--EWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGF 220

Query: 246 NANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
           + N+ LR    ID  +  Q   +  ++   + I Y         ++ SDH P+   +
Sbjct: 221 DDNRGLR----IDLLLASQPLAECCVE---TGIDYEIRS----MEKPSDHAPVWATF 266


>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
           lectularius) [TaxId: 79782]}
          Length = 280

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 32/296 (10%), Positives = 67/296 (22%), Gaps = 39/296 (13%)

Query: 23  KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
            V  VSWN         +                     +  D   V +Q  G       
Sbjct: 6   SVHTVSWNSGHERAPTNLEELLGLNSG------------ETPDVIAVAVQGFGFQTD--- 50

Query: 83  VFPKNTWCI--FYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRA 140
              +   C+  F S      ++K  +       + V      + Q +        +    
Sbjct: 51  KPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQ 110

Query: 141 GNRRAVELLVEINGKKIWVLDIHLKS-----------FCFLDSLENTYSPSCSLLSQQAQ 189
                +     I  K+       +             +           PS  L      
Sbjct: 111 KKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDL 170

Query: 190 WLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANK 249
            ++          +      D     + L    +        +  + F      + N ++
Sbjct: 171 NVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDE 230

Query: 250 NLRNKIP--IDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303
              +  P   D  +      K +   S+   L N         + ++H P+   + 
Sbjct: 231 YDLSATPSWTDRALYKSGTGKTIQPLSY-NSLTNY--------KQTEHRPVLAKFR 277


>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 345

 Score = 35.9 bits (82), Expect = 0.004
 Identities = 40/313 (12%), Positives = 83/313 (26%), Gaps = 54/313 (17%)

Query: 23  KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
           K+ + S+N+N  S    +  W            L  +     D  +V  QE+        
Sbjct: 26  KIFVASYNLNGCSATTKLENW------------LFPENTPLADIYVVGFQEIVQLTPQQV 73

Query: 83  VFPKNTWCIFYSTERLINHSKRDSNND------------IHTAIAVRKKNVRVLQQSYPL 130
           +         + +      + + ++                  I  ++  +  ++     
Sbjct: 74  ISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGT 133

Query: 131 LGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQW 190
           +        +GN+ AV +  +     +  +  HL +          Y          A  
Sbjct: 134 VKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAG------YTNYDERDHDYRTIASG 187

Query: 191 LKDWITQKKESLVPFVIAGDFNRKINYLGNN------DDFWKTIDPNDSLIRFPKEKDSR 244
           L+    +   +    V  GDFN +I+                 +   D L +        
Sbjct: 188 LRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVF 247

Query: 245 CNANKNLRNKIPIDYFVMDQNAY-------------KFLIQESFSEILYNEDDIKSRGKR 291
              ++      P   F +  + Y             + L +       Y    +      
Sbjct: 248 PFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRGELVPHSYQSVPLYY---- 303

Query: 292 LSDHCPISIDYDF 304
            SDH PI   Y+ 
Sbjct: 304 -SDHRPIYATYEA 315


>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
           transcriptase homolog {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 236

 Score = 32.4 bits (72), Expect = 0.048
 Identities = 31/283 (10%), Positives = 67/283 (23%), Gaps = 57/283 (20%)

Query: 23  KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82
            + +++ NIN L               +      L  + K+ D  +  +QE         
Sbjct: 5   HITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTH 50

Query: 83  VFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGN 142
                 W   Y        +          AI V  K                   R   
Sbjct: 51  RLKIKGWRKIYQANGKQKKA--------GVAILVSDKTDFK----------PTKIKRDKE 92

Query: 143 RRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESL 202
              + +   I  +++ +L+I+  +                      +++K  ++  +  L
Sbjct: 93  GHYIMVKGSIQQEELTILNIYAPNTGAP------------------RFIKQVLSDLQRDL 134

Query: 203 VPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYFVM 262
               +            +     K       L     + D                +F  
Sbjct: 135 DSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSA 194

Query: 263 DQNAYK----FLIQESFSEILYNEDDIKSRGKRLSDHCPISID 301
             + Y      +  ++           +     LSDH  I ++
Sbjct: 195 PHHTYSKIDHIVGSKALLSKC---KRTEIITNYLSDHSAIKLE 234


>d1a62a2 b.40.4.5 (A:48-125) Rho termination factor, RNA-binding
           domain {Escherichia coli [TaxId: 562]}
          Length = 78

 Score = 27.8 bits (62), Expect = 1.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 159 VLDIHLKSFCFLDSLENTYSPS 180
           VL+I    F FL S +++Y   
Sbjct: 7   VLEILQDGFGFLRSADSSYLAG 28


>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain
           {Thermotoga maritima [TaxId: 2336]}
          Length = 173

 Score = 27.5 bits (60), Expect = 1.4
 Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 2/85 (2%)

Query: 86  KNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRA 145
                +    E     S     N     +    K            G     +     RA
Sbjct: 86  DAGILLNRGQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERA 145

Query: 146 VELLVEINGKKIW--VLDIHLKSFC 168
           + LL E+ G+     +LD    +FC
Sbjct: 146 LNLLDEVTGRSFREDLLDTIFSNFC 170


>d2gdta1 d.346.1.1 (A:2-116) Nsp1 {SARS coronavirus [TaxId: 227859]}
          Length = 115

 Score = 27.3 bits (60), Expect = 1.8
 Identities = 14/61 (22%), Positives = 28/61 (45%)

Query: 94  STERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEIN 153
           S E  ++ ++    N     + + K  +  L+Q Y  +   D+ S     + VEL+ E++
Sbjct: 22  SVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMD 81

Query: 154 G 154
           G
Sbjct: 82  G 82


>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
           methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
           53953]}
          Length = 375

 Score = 26.5 bits (58), Expect = 2.6
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 11/57 (19%)

Query: 107 NNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIH 163
           N DI   +        VL          D+ S  G R  +   +E   +++W+ DI 
Sbjct: 33  NRDIVVVLLNILNPKIVL----------DALSATGIR-GIRFALETPAEEVWLNDIS 78


>d1bwda_ d.126.1.2 (A:) L-arginine: inosamine-phosphate
           amidinotransferase {Streptomyces griseus [TaxId: 1911]}
          Length = 348

 Score = 24.9 bits (53), Expect = 8.2
 Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 8/92 (8%)

Query: 138 SRAGNRRAVELLVEINGKKIWVLDI-------HLKS-FCFLDSLENTYSPSCSLLSQQAQ 189
           S +GN    + L    G    V          H+ S    L       +PS         
Sbjct: 195 SDSGNELGAKWLQSAVGDTYTVHPCRKLYASTHVDSTIVPLRPGLVLTNPSRVNDENMPD 254

Query: 190 WLKDWITQKKESLVPFVIAGDFNRKINYLGNN 221
           +L+ W       LV     GD      ++G N
Sbjct: 255 FLRSWENITCPELVDIGFTGDKPHCSVWIGMN 286


>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId:
           1280]}
          Length = 173

 Score = 24.9 bits (54), Expect = 9.8
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 9/66 (13%)

Query: 59  QYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHT--AIAV 116
            + +        L  M +YN V  +   N           I  S+ +S N +H   A+AV
Sbjct: 71  YFGQTQGRSPQLLNRMTTYNEVDNLTKNN-------KGIAILGSRVESRNGMHAGHAMAV 123

Query: 117 RKKNVR 122
                 
Sbjct: 124 VGNAKL 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0427    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,128,303
Number of extensions: 51343
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 26
Length of query: 304
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,240,546
Effective search space: 271679574
Effective search space used: 271679574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)