RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter asiaticus str. psy62] (304 letters) >d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Length = 250 Score = 59.3 bits (142), Expect = 4e-10 Identities = 42/280 (15%), Positives = 82/280 (29%), Gaps = 37/280 (13%) Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82 R+ +WN+ ++ + + + + + DI+ +QE GS + A Sbjct: 4 DFRVATWNLQ----------GASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAV 53 Query: 83 VFPKNTWCIFYSTERLINHSKRDSNNDIHTAI--AVRKKNVRVLQQSYPLLGAKDSFSRA 140 + LI + +S AV RV A + F + Sbjct: 54 DTGRVIPSPGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLS 113 Query: 141 GNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKE 200 R+ L+ I H + D+ L ++ Sbjct: 114 PVRQGGRPLLGIRIGNDAFFTAHAIAMRNNDAPA---------LVEEVYNFFRDSRDPVH 164 Query: 201 SLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYF 260 + ++I GDFNR+ L N + ++ ++ +DY Sbjct: 165 QALNWMILGDFNREPADLEMNLTVPVR----RASEIISPAAATQ-------TSQRTLDYA 213 Query: 261 VMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISI 300 V + + S + R + SDH P+ + Sbjct: 214 VAGNS-----VAFRPSPLQAGIVYGARRTQISSDHFPVGV 248 >d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Length = 299 Score = 58.5 bits (139), Expect = 6e-10 Identities = 39/309 (12%), Positives = 90/309 (29%), Gaps = 39/309 (12%) Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82 +++++ N+ LS + + L+ + D+V L E+ +A + Sbjct: 3 TLKVMTHNVYMLSTNLYPNWGQTERAD------LIGAADYIKNQDVVILNEVFDNSASDR 56 Query: 83 VFPKNTWCIFYSTERLINHSKRDSN-----------NDIHTAIAVRKKNVRVLQQSYPLL 131 + T L S + + D AI + +Q + Sbjct: 57 LLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKG 116 Query: 132 GAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWL 191 D+ S + V ++ N + + V+ HL++ + + +Q + Sbjct: 117 CGPDNLSN---KGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPA---SVRTNQLKEIQ 170 Query: 192 KDWITQKKESLVPFVIAGDFN--------RKINYLGNNDDFWKTIDPNDSLIRFPKEKDS 243 + + +I GD N + + P+ + + + Sbjct: 171 DFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWDATT 230 Query: 244 RCNANKNLRNKIP--IDYFVMDQNAYK------FLIQESFSEILYNEDDIKSRGKRLSDH 295 A N + +DY + ++ ++Q + K SDH Sbjct: 231 NSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDH 290 Query: 296 CPISIDYDF 304 P+ Sbjct: 291 YPVEATISM 299 >d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Length = 293 Score = 56.5 bits (134), Expect = 3e-09 Identities = 37/302 (12%), Positives = 85/302 (28%), Gaps = 29/302 (9%) Query: 21 AQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAV 80 ++ S N+ S + + R L+ Q + D+V L E +A Sbjct: 2 PGNFKITSHNVYLFSRN--IYPNWGQMHR----ADLIAQADYMKNNDVVILNEAFDTSAS 55 Query: 81 AKVFPKNTWCIFYSTERLINH--------SKRDSNNDIHTAIAVRKKNVRVLQQSYPLLG 132 ++ + T + + +AV + V + + Sbjct: 56 HRLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQR 115 Query: 133 AKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLK 192 + R N+ + + NGK ++ H ++ L S + + Q + Sbjct: 116 GGGAD-RLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSR---AIRAEQMQEIQT 171 Query: 193 DWITQKKESLVPFVIAGDFN-----RKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNA 247 + I GD N + + + + + N + + +S Sbjct: 172 FIAKKNIPKDEIIFIGGDLNVNYGTDEYHDMLKLLNVSSPANFNGQMATWDPTTNSMLKE 231 Query: 248 NKNLRNKIPIDYFVMDQNAYK------FLIQESFSEILYNEDDIKSRGKRLSDHCPISID 301 + +DY ++ + ++ + + SDH P+ Sbjct: 232 SYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGF 291 Query: 302 YD 303 D Sbjct: 292 TD 293 >d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Length = 275 Score = 51.6 bits (122), Expect = 7e-08 Identities = 35/288 (12%), Positives = 76/288 (26%), Gaps = 42/288 (14%) Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84 ++ SWN++ L + +K+ + K DI+ LQE Sbjct: 20 KICSWNVDGL---------RAWIKK------KGLDWVKEEAPDILCLQET---KCSENKL 61 Query: 85 PKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRR 144 P + + + + ++ + + A Sbjct: 62 PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDS 121 Query: 145 AVELLVEINGKKIWVLDIHLKSFCFLDSL---------ENTYSPSCSLLSQQAQWLKDWI 195 V + + ++ + + + ++ + L++ Sbjct: 122 FVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK 181 Query: 196 TQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKI 255 KK + F + + D F F + + N R Sbjct: 182 GNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWR--- 238 Query: 256 PIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 +DYF++ + L S+I SDHCPI++ Sbjct: 239 -LDYFLLSHSLLPALCD---SKIRSKA--------LGSDHCPITLYLA 274 >d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Length = 260 Score = 50.0 bits (117), Expect = 2e-07 Identities = 41/283 (14%), Positives = 83/283 (29%), Gaps = 32/283 (11%) Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNL-DADIVFLQEM--GSYNAVA 81 ++ ++NI T + S+ TL + + DIV +QE+ AV Sbjct: 2 KIAAFNIRTFG------------ETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVG 49 Query: 82 KVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAG 141 K+ + +++ ++ R V VL G + + + Sbjct: 50 KLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSF 109 Query: 142 NRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKES 201 +R + + K+ I + + Q+K Sbjct: 110 SREPAVVKFSSHSTKVKEFAIVALHSAP---------SDAVAEINSLYDVYLDV-QQKWH 159 Query: 202 LVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYFV 261 L ++ GDFN +Y+ W +I S DS + D V Sbjct: 160 LNDVMLMGDFNADCSYV--TSSQWSSIRLRTSSTFQWLIPDSADTTATSTNC--AYDRIV 215 Query: 262 MDQNAYKFLIQESFSEILYNEDDIKS---RGKRLSDHCPISID 301 + + + + + + +SDH P+ + Sbjct: 216 VAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVT 258 >d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Length = 261 Score = 49.5 bits (116), Expect = 3e-07 Identities = 35/288 (12%), Positives = 86/288 (29%), Gaps = 36/288 (12%) Query: 22 QKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNA-- 79 ++ +WN+ ++V + + + + + ADI+ +QE GS + Sbjct: 3 SDFKVATWNLQ----------GSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSA 52 Query: 80 --VAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKK--NVRVLQQSYPLLGAKD 135 ++V I T L S+ + ++ + V N+ ++ + Sbjct: 53 VRTSRVIQHGGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIV 112 Query: 136 SFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWI 195 + + + + I +H + D++ Sbjct: 113 HSDSSVLQSRPAVGIRIGT--DVFFTVHALATGGSDAVSLIR--------NIFTTFNSSS 162 Query: 196 TQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKI 255 + + + +++ GDFNR + + Sbjct: 163 SPPERRVYSWMVVGDFNR-----APANLEVALRQEPAVSENTIIIAPTEPTHRSGNI--- 214 Query: 256 PIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 +DY ++ +++ I + + R + SDH P+S D Sbjct: 215 -LDYAILHDAHLPR-REQARERIGASLMLNQLRSQITSDHFPVSFVRD 260 >d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Length = 228 Score = 46.2 bits (108), Expect = 4e-06 Identities = 34/285 (11%), Positives = 67/285 (23%), Gaps = 69/285 (24%) Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84 R++ N+ R L A A I +QE Y AK Sbjct: 4 RVLQANLQ----------------RKKLATAELAIEAATRKAAIALIQEP--YVGGAKSM 45 Query: 85 PKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRR 144 + S + + AIAV ++ V+Q Sbjct: 46 KGFRGVRVF-------QSTAQGDGTVKAAIAVFDHDLDVIQYPQL-----------TTNN 87 Query: 145 AVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESLVP 204 V + + +I ++ + + ++S + + Sbjct: 88 IVVVGIRTRAWEITLVSYYFEPDKPIESYLEQIKRVERKMGPK----------------R 131 Query: 205 FVIAGDFNRK------INYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPID 258 + GD N K D T+ I + + R + +D Sbjct: 132 LIFGGDANAKSTWWGSKEDDARGDQLMGTLGELGLHILNEGDVPTFDTIRGGKRYQSRVD 191 Query: 259 YFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 ++ + + SDH + + Sbjct: 192 VTFCTEDMLDLIDG---WRVD--------EDLVSSDHNGMVFNIR 225 >d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Length = 268 Score = 41.7 bits (96), Expect = 8e-05 Identities = 38/297 (12%), Positives = 77/297 (25%), Gaps = 51/297 (17%) Query: 25 RLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAKVF 84 + VS+NIN G+ + ++ + D++ LQE +F Sbjct: 2 KFVSFNIN------GLRARPHQLE----------AIVEKHQPDVIGLQE---TKVHDDMF 42 Query: 85 PKN-TWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNR 143 P + Y+ ++ + Sbjct: 43 PLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGN 102 Query: 144 RAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSL------------------LS 185 V G+ F +L+N + Sbjct: 103 VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIG 162 Query: 186 QQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRC 245 + K W+ K S +P ++ ++ G D F + + Sbjct: 163 IGEENRKRWLRTGKCSFLPEER--EWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGF 220 Query: 246 NANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302 + N+ LR ID + Q + ++ + I Y ++ SDH P+ + Sbjct: 221 DDNRGLR----IDLLLASQPLAECCVE---TGIDYEIRS----MEKPSDHAPVWATF 266 >d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Length = 280 Score = 40.4 bits (93), Expect = 2e-04 Identities = 32/296 (10%), Positives = 67/296 (22%), Gaps = 39/296 (13%) Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82 V VSWN + + D V +Q G Sbjct: 6 SVHTVSWNSGHERAPTNLEELLGLNSG------------ETPDVIAVAVQGFGFQTD--- 50 Query: 83 VFPKNTWCI--FYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRA 140 + C+ F S ++K + + V + Q + + Sbjct: 51 KPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQ 110 Query: 141 GNRRAVELLVEINGKKIWVLDIHLKS-----------FCFLDSLENTYSPSCSLLSQQAQ 189 + I K+ + + PS L Sbjct: 111 KKSGGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDL 170 Query: 190 WLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANK 249 ++ + D + L + + + F + N ++ Sbjct: 171 NVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDE 230 Query: 250 NLRNKIP--IDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDYD 303 + P D + K + S+ L N + ++H P+ + Sbjct: 231 YDLSATPSWTDRALYKSGTGKTIQPLSY-NSLTNY--------KQTEHRPVLAKFR 277 >d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 345 Score = 35.9 bits (82), Expect = 0.004 Identities = 40/313 (12%), Positives = 83/313 (26%), Gaps = 54/313 (17%) Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82 K+ + S+N+N S + W L + D +V QE+ Sbjct: 26 KIFVASYNLNGCSATTKLENW------------LFPENTPLADIYVVGFQEIVQLTPQQV 73 Query: 83 VFPKNTWCIFYSTERLINHSKRDSNND------------IHTAIAVRKKNVRVLQQSYPL 130 + + + + + ++ I ++ + ++ Sbjct: 74 ISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGT 133 Query: 131 LGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQW 190 + +GN+ AV + + + + HL + Y A Sbjct: 134 VKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAG------YTNYDERDHDYRTIASG 187 Query: 191 LKDWITQKKESLVPFVIAGDFNRKINYLGNN------DDFWKTIDPNDSLIRFPKEKDSR 244 L+ + + V GDFN +I+ + D L + Sbjct: 188 LRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVF 247 Query: 245 CNANKNLRNKIPIDYFVMDQNAY-------------KFLIQESFSEILYNEDDIKSRGKR 291 ++ P F + + Y + L + Y + Sbjct: 248 PFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRGELVPHSYQSVPLYY---- 303 Query: 292 LSDHCPISIDYDF 304 SDH PI Y+ Sbjct: 304 -SDHRPIYATYEA 315 >d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Score = 32.4 bits (72), Expect = 0.048 Identities = 31/283 (10%), Positives = 67/283 (23%), Gaps = 57/283 (20%) Query: 23 KVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNAVAK 82 + +++ NIN L + L + K+ D + +QE Sbjct: 5 HITILTLNINGL--------------NSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTH 50 Query: 83 VFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGN 142 W Y + AI V K R Sbjct: 51 RLKIKGWRKIYQANGKQKKA--------GVAILVSDKTDFK----------PTKIKRDKE 92 Query: 143 RRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKKESL 202 + + I +++ +L+I+ + +++K ++ + L Sbjct: 93 GHYIMVKGSIQQEELTILNIYAPNTGAP------------------RFIKQVLSDLQRDL 134 Query: 203 VPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLRNKIPIDYFVM 262 + + K L + D +F Sbjct: 135 DSHTLIMGDFNTPLSTLDRSTRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSA 194 Query: 263 DQNAYK----FLIQESFSEILYNEDDIKSRGKRLSDHCPISID 301 + Y + ++ + LSDH I ++ Sbjct: 195 PHHTYSKIDHIVGSKALLSKC---KRTEIITNYLSDHSAIKLE 234 >d1a62a2 b.40.4.5 (A:48-125) Rho termination factor, RNA-binding domain {Escherichia coli [TaxId: 562]} Length = 78 Score = 27.8 bits (62), Expect = 1.3 Identities = 8/22 (36%), Positives = 12/22 (54%) Query: 159 VLDIHLKSFCFLDSLENTYSPS 180 VL+I F FL S +++Y Sbjct: 7 VLEILQDGFGFLRSADSSYLAG 28 >d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]} Length = 173 Score = 27.5 bits (60), Expect = 1.4 Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 2/85 (2%) Query: 86 KNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRA 145 + E S N + K G + RA Sbjct: 86 DAGILLNRGQEIFERGSDSLITNLRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERA 145 Query: 146 VELLVEINGKKIW--VLDIHLKSFC 168 + LL E+ G+ +LD +FC Sbjct: 146 LNLLDEVTGRSFREDLLDTIFSNFC 170 >d2gdta1 d.346.1.1 (A:2-116) Nsp1 {SARS coronavirus [TaxId: 227859]} Length = 115 Score = 27.3 bits (60), Expect = 1.8 Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 94 STERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEIN 153 S E ++ ++ N + + K + L+Q Y + D+ S + VEL+ E++ Sbjct: 22 SVEEALSEAREHLKNGTCGLVELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMD 81 Query: 154 G 154 G Sbjct: 82 G 82 >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} Length = 375 Score = 26.5 bits (58), Expect = 2.6 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 11/57 (19%) Query: 107 NNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIH 163 N DI + VL D+ S G R + +E +++W+ DI Sbjct: 33 NRDIVVVLLNILNPKIVL----------DALSATGIR-GIRFALETPAEEVWLNDIS 78 >d1bwda_ d.126.1.2 (A:) L-arginine: inosamine-phosphate amidinotransferase {Streptomyces griseus [TaxId: 1911]} Length = 348 Score = 24.9 bits (53), Expect = 8.2 Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 8/92 (8%) Query: 138 SRAGNRRAVELLVEINGKKIWVLDI-------HLKS-FCFLDSLENTYSPSCSLLSQQAQ 189 S +GN + L G V H+ S L +PS Sbjct: 195 SDSGNELGAKWLQSAVGDTYTVHPCRKLYASTHVDSTIVPLRPGLVLTNPSRVNDENMPD 254 Query: 190 WLKDWITQKKESLVPFVIAGDFNRKINYLGNN 221 +L+ W LV GD ++G N Sbjct: 255 FLRSWENITCPELVDIGFTGDKPHCSVWIGMN 286 >d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]} Length = 173 Score = 24.9 bits (54), Expect = 9.8 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 9/66 (13%) Query: 59 QYAKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHT--AIAV 116 + + L M +YN V + N I S+ +S N +H A+AV Sbjct: 71 YFGQTQGRSPQLLNRMTTYNEVDNLTKNN-------KGIAILGSRVESRNGMHAGHAMAV 123 Query: 117 RKKNVR 122 Sbjct: 124 VGNAKL 129 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.135 0.408 Gapped Lambda K H 0.267 0.0427 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,128,303 Number of extensions: 51343 Number of successful extensions: 172 Number of sequences better than 10.0: 1 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 26 Length of query: 304 Length of database: 2,407,596 Length adjustment: 85 Effective length of query: 219 Effective length of database: 1,240,546 Effective search space: 271679574 Effective search space used: 271679574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 53 (25.0 bits)