BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter asiaticus str. psy62] (304 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter asiaticus str. psy62] Length = 304 Score = 625 bits (1612), Expect = 0.0, Method: Compositional matrix adjust. Identities = 304/304 (100%), Positives = 304/304 (100%) Query: 1 MIRKYVLALVFFLVPCTASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQY 60 MIRKYVLALVFFLVPCTASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQY Sbjct: 1 MIRKYVLALVFFLVPCTASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQY 60 Query: 61 AKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKN 120 AKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKN Sbjct: 61 AKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKN 120 Query: 121 VRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPS 180 VRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPS Sbjct: 121 VRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPS 180 Query: 181 CSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKE 240 CSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKE Sbjct: 181 CSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKE 240 Query: 241 KDSRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISI 300 KDSRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISI Sbjct: 241 KDSRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISI 300 Query: 301 DYDF 304 DYDF Sbjct: 301 DYDF 304 >gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62] Length = 231 Score = 242 bits (618), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 118/235 (50%), Positives = 166/235 (70%), Gaps = 9/235 (3%) Query: 20 VAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNA 79 +AQ++R+ SWNIN LSE+ GV+L+KNSV R +DY LL++YA+ LDADIV LQE+GSY A Sbjct: 3 LAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA 62 Query: 80 VAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSR 139 + +VFP + W I YS H+ +HTAI +RK + +LQ+SY + + S+ Sbjct: 63 IKRVFPNDKWDILYSGSNTDKHA-------MHTAIVIRKGAIHLLQKSYLPMDTEGLDSK 115 Query: 140 AGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKK 199 AG RRAVE+L E++G+KIW+LDIHLKSFCFLDS+E++Y SC +L+ QA WLK W+ QK Sbjct: 116 AGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKN 175 Query: 200 ESLVPFVIAGDFNRKIN--YLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLR 252 +PF+IAGDFNRKIN + G D+ W+ I+ +++L+R P +K+ K L+ Sbjct: 176 NLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHNAIRTKILK 230 >gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter asiaticus str. psy62] Length = 125 Score = 145 bits (365), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 67/122 (54%), Positives = 92/122 (75%), Gaps = 2/122 (1%) Query: 183 LLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKD 242 +LSQQ +WLK W QK ++ +PFVIAGDFNRKIN +G+ DDFW+ +DP+ LIRFP+EK+ Sbjct: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60 Query: 243 SRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302 S CN K RNK +DYFV+D++ FLI SFS + Y++ D+ +R +LS HCP++I+Y Sbjct: 61 STCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118 Query: 303 DF 304 DF Sbjct: 119 DF 120 >gi|254780996|ref|YP_003065409.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter asiaticus str. psy62] Length = 109 Score = 82.4 bits (202), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 18/109 (16%) Query: 84 FPKNTWCIFYS----------TERLINHSKRDSNN--------DIHTAIAVRKKNVRVLQ 125 P++ W IFYS + +N S D N+ DI+TAIA+RK RVLQ Sbjct: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60 Query: 126 QSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLE 174 SYPL ++ R GNR+ VELL+EI+ +K+W+L++HLKS C + ++ Sbjct: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109 >gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62] Length = 211 Score = 24.6 bits (52), Expect = 1.9, Method: Compositional matrix adjust. Identities = 13/32 (40%), Positives = 16/32 (50%) Query: 123 VLQQSYPLLGAKDSFSRAGNRRAVELLVEING 154 VL PLL +A N+R E+ VE NG Sbjct: 89 VLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120 >gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 232 Score = 24.6 bits (52), Expect = 2.2, Method: Compositional matrix adjust. Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Query: 255 IPIDYFVMDQNAYKFLIQESFSEI-LYNEDDIKSRGKRLSDHCPI 298 +P+ YF+ D+ + +Q+S+ I + + + + + H PI Sbjct: 29 MPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPI 73 >gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus str. psy62] Length = 307 Score = 23.9 bits (50), Expect = 3.5, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 6/39 (15%) Query: 65 DADIVF----LQEMGSYNAVAKVFPKNTWC--IFYSTER 97 D D++F L+EM S +AVA WC FY R Sbjct: 166 DPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHR 204 >gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 22.7 bits (47), Expect = 8.0, Method: Compositional matrix adjust. Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 249 KNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDD 284 KN ++IP F M YK + +F Y++D+ Sbjct: 213 KNFLSQIPYKNFCMAPYHYKSIFYWAFENFQYHQDN 248 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.135 0.408 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,405 Number of Sequences: 1233 Number of extensions: 8713 Number of successful extensions: 27 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 9 length of query: 304 length of database: 328,796 effective HSP length: 74 effective length of query: 230 effective length of database: 237,554 effective search space: 54637420 effective search space used: 54637420 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)