BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781003|ref|YP_003065416.1| hypothetical protein
CLIBASIA_04520 [Candidatus Liberibacter asiaticus str. psy62]
         (304 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 304

 Score =  625 bits (1612), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/304 (100%), Positives = 304/304 (100%)

Query: 1   MIRKYVLALVFFLVPCTASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQY 60
           MIRKYVLALVFFLVPCTASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQY
Sbjct: 1   MIRKYVLALVFFLVPCTASVAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQY 60

Query: 61  AKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKN 120
           AKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKN
Sbjct: 61  AKNLDADIVFLQEMGSYNAVAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKN 120

Query: 121 VRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPS 180
           VRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPS
Sbjct: 121 VRVLQQSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPS 180

Query: 181 CSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKE 240
           CSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKE
Sbjct: 181 CSLLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKE 240

Query: 241 KDSRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISI 300
           KDSRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISI
Sbjct: 241 KDSRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISI 300

Query: 301 DYDF 304
           DYDF
Sbjct: 301 DYDF 304


>gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 231

 Score =  242 bits (618), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 118/235 (50%), Positives = 166/235 (70%), Gaps = 9/235 (3%)

Query: 20  VAQKVRLVSWNINTLSEQEGVSLWKNSVKRTTSDYTLLRQYAKNLDADIVFLQEMGSYNA 79
           +AQ++R+ SWNIN LSE+ GV+L+KNSV R  +DY LL++YA+ LDADIV LQE+GSY A
Sbjct: 3   LAQRIRIASWNINNLSEKSGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEA 62

Query: 80  VAKVFPKNTWCIFYSTERLINHSKRDSNNDIHTAIAVRKKNVRVLQQSYPLLGAKDSFSR 139
           + +VFP + W I YS      H+       +HTAI +RK  + +LQ+SY  +  +   S+
Sbjct: 63  IKRVFPNDKWDILYSGSNTDKHA-------MHTAIVIRKGAIHLLQKSYLPMDTEGLDSK 115

Query: 140 AGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLENTYSPSCSLLSQQAQWLKDWITQKK 199
           AG RRAVE+L E++G+KIW+LDIHLKSFCFLDS+E++Y  SC +L+ QA WLK W+ QK 
Sbjct: 116 AGKRRAVEILFEVDGRKIWLLDIHLKSFCFLDSIEDSYISSCYMLNLQATWLKQWVDQKN 175

Query: 200 ESLVPFVIAGDFNRKIN--YLGNNDDFWKTIDPNDSLIRFPKEKDSRCNANKNLR 252
              +PF+IAGDFNRKIN  + G  D+ W+ I+ +++L+R P +K+      K L+
Sbjct: 176 NLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNTLMRLPHKKNHNAIRTKILK 230


>gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 125

 Score =  145 bits (365), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 92/122 (75%), Gaps = 2/122 (1%)

Query: 183 LLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKD 242
           +LSQQ +WLK W  QK ++ +PFVIAGDFNRKIN +G+ DDFW+ +DP+  LIRFP+EK+
Sbjct: 1   MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60

Query: 243 SRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
           S CN  K  RNK  +DYFV+D++   FLI  SFS + Y++ D+ +R  +LS HCP++I+Y
Sbjct: 61  STCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118

Query: 303 DF 304
           DF
Sbjct: 119 DF 120


>gi|254780996|ref|YP_003065409.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 109

 Score = 82.4 bits (202), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 18/109 (16%)

Query: 84  FPKNTWCIFYS----------TERLINHSKRDSNN--------DIHTAIAVRKKNVRVLQ 125
            P++ W IFYS           +  +N S  D N+        DI+TAIA+RK   RVLQ
Sbjct: 1   MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60

Query: 126 QSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLE 174
            SYPL   ++   R GNR+ VELL+EI+ +K+W+L++HLKS C +  ++
Sbjct: 61  VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109


>gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 211

 Score = 24.6 bits (52), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 123 VLQQSYPLLGAKDSFSRAGNRRAVELLVEING 154
           VL    PLL       +A N+R  E+ VE NG
Sbjct: 89  VLTGGEPLLQVDVPLIQALNKRGFEIAVETNG 120


>gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 232

 Score = 24.6 bits (52), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 255 IPIDYFVMDQNAYKFLIQESFSEI-LYNEDDIKSRGKRLSDHCPI 298
           +P+ YF+ D+ +    +Q+S+  I + + + + +       H PI
Sbjct: 29  MPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPI 73


>gi|254781073|ref|YP_003065486.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 307

 Score = 23.9 bits (50), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 6/39 (15%)

Query: 65  DADIVF----LQEMGSYNAVAKVFPKNTWC--IFYSTER 97
           D D++F    L+EM S +AVA       WC   FY   R
Sbjct: 166 DPDVIFFHNTLKEMCSQHAVANYTHYKEWCDRYFYLPHR 204


>gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 408

 Score = 22.7 bits (47), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 249 KNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDD 284
           KN  ++IP   F M    YK +   +F    Y++D+
Sbjct: 213 KNFLSQIPYKNFCMAPYHYKSIFYWAFENFQYHQDN 248


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 202,405
Number of Sequences: 1233
Number of extensions: 8713
Number of successful extensions: 27
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 9
length of query: 304
length of database: 328,796
effective HSP length: 74
effective length of query: 230
effective length of database: 237,554
effective search space: 54637420
effective search space used: 54637420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)