HHsearch alignment for GI: 254781004 and conserved domain: COG0013
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.56 E-value=2e-13 Score=112.52 Aligned_cols=162 Identities=22% Similarity=0.450 Sum_probs=117.0
Q ss_pred HHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf 9999-9998999999999997799889972435-8855788408888889899999999999996699804853276785
Q gi|254781004|r 69 SLAV-IRHSCAHIMAEAVQSIWPEVQVAIGPII-EDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKA 146 (652)
Q Consensus 69 g~~i-~~hS~ahlL~~Av~~l~p~~kl~igp~i-~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA 146 (652)
T Consensus 560 R~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eA 639 (879)
T COG0013 560 RRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNEIIRENLPVKTEEMDLDEA 639 (879)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 99998627699999999999737321206764677706885317888999999999999999998289414897369999
Q ss_pred HHH--HHHCCCHHHHHHHHHCCCCCCCEEECCCCC-EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEE
Q ss_conf 445--441671135566542034554213025752-01000235521444222333333211101577564206899999
Q gi|254781004|r 147 REL--FESKKEAYKVEILESIPAKENVTLYRQGEW-FDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGT 223 (652)
Q Consensus 147 ~~~--F~~~~~~~K~~li~~~~~~~~v~~y~~g~~-~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~ 223 (652)
T Consensus 640 k~~Ga~alfGekY---------~-~~VRVV~ig~~SvElCGGTHv~~Tg~IG~-fkI~~e~~i-----~a--GVrRIeav 701 (879)
T COG0013 640 KAKGAMALFGEKY---------G-DEVRVVEIGDFSVELCGGTHVSNTGDIGL-FKIISEEGI-----AA--GVRRIEAV 701 (879)
T ss_pred HHHCHHHHCCCCC---------C-CEEEEEEECCCEEECCCCCCCCCCCCEEE-EEEEEECCC-----CC--CEEEEEEE
T ss_conf 9719296528867---------9-86899998991566137745677565011-799876413-----06--75899998
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 83798899999999997532008875411440
Q gi|254781004|r 224 AWNTQQELTQYLYFLEESEKRDHRKLAREMDL 255 (652)
Q Consensus 224 af~~~~~l~~~~~~~eea~~rdHr~lg~~~~l 255 (652)
T Consensus 702 t--G~~a~-~~~~~~~~----~l~~~a~~lk~ 726 (879)
T COG0013 702 T--GEAAL-EYLQEQED----LLKEIASLLKV 726 (879)
T ss_pred C--CHHHH-HHHHHHHH----HHHHHHHHHCC
T ss_conf 2--78999-99999999----99999998689