HHsearch alignment for GI: 254781004 and conserved domain: COG0013

>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.56  E-value=2e-13  Score=112.52  Aligned_cols=162  Identities=22%  Similarity=0.450  Sum_probs=117.0

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
Q ss_conf             9999-9998999999999997799889972435-8855788408888889899999999999996699804853276785
Q gi|254781004|r   69 SLAV-IRHSCAHIMAEAVQSIWPEVQVAIGPII-EDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHEKA  146 (652)
Q Consensus        69 g~~i-~~hS~ahlL~~Av~~l~p~~kl~igp~i-~~GfYyD~~~~~~it~~dl~~Ie~~M~~ii~~~~pi~r~~vs~~eA  146 (652)
T Consensus       560 R~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eA  639 (879)
T COG0013         560 RRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVNEIIRENLPVKTEEMDLDEA  639 (879)
T ss_pred             HHHHHHHCHHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf             99998627699999999999737321206764677706885317888999999999999999998289414897369999


Q ss_pred             HHH--HHHCCCHHHHHHHHHCCCCCCCEEECCCCC-EEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEE
Q ss_conf             445--441671135566542034554213025752-01000235521444222333333211101577564206899999
Q gi|254781004|r  147 REL--FESKKEAYKVEILESIPAKENVTLYRQGEW-FDLCRGPHVRSTGQVKKFFKLMKVAGAYWRGDSNRPMLSRIYGT  223 (652)
Q Consensus       147 ~~~--F~~~~~~~K~~li~~~~~~~~v~~y~~g~~-~Dlc~GphvpsTg~ik~~fkL~~~sgayw~gd~~~~~l~Riyg~  223 (652)
T Consensus       640 k~~Ga~alfGekY---------~-~~VRVV~ig~~SvElCGGTHv~~Tg~IG~-fkI~~e~~i-----~a--GVrRIeav  701 (879)
T COG0013         640 KAKGAMALFGEKY---------G-DEVRVVEIGDFSVELCGGTHVSNTGDIGL-FKIISEEGI-----AA--GVRRIEAV  701 (879)
T ss_pred             HHHCHHHHCCCCC---------C-CEEEEEEECCCEEECCCCCCCCCCCCEEE-EEEEEECCC-----CC--CEEEEEEE
T ss_conf             9719296528867---------9-86899998991566137745677565011-799876413-----06--75899998


Q ss_pred             EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCE
Q ss_conf             83798899999999997532008875411440
Q gi|254781004|r  224 AWNTQQELTQYLYFLEESEKRDHRKLAREMDL  255 (652)
Q Consensus       224 af~~~~~l~~~~~~~eea~~rdHr~lg~~~~l  255 (652)
T Consensus       702 t--G~~a~-~~~~~~~~----~l~~~a~~lk~  726 (879)
T COG0013         702 T--GEAAL-EYLQEQED----LLKEIASLLKV  726 (879)
T ss_pred             C--CHHHH-HHHHHHHH----HHHHHHHHHCC
T ss_conf             2--78999-99999999----99999998689