HHsearch alignment for GI: 254781004 and conserved domain: COG0016
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis].
Probab=95.98 E-value=0.15 Score=30.45 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=91.2
Q ss_pred HHHHHHHHH--HHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 320088754--1144044226787435650107899999999999887-6896385554324431000112100125554
Q gi|254781004|r 242 EKRDHRKLA--REMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANM 318 (652)
Q Consensus 242 ~~rdHr~lg--~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~m 318 (652)
T Consensus 78 ~~~~l~~~~~~~~l~~e~~dv~lp~~-~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~-IE~d~~N--------FDaL 147 (335)
T COG0016 78 LTPELEAAGLWERLAFEKIDVTLPGR-RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPE-IETDFYN--------FDAL 147 (335)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCC-CCCCCCC--------HHHH
T ss_conf 88999987898862215777578886-677898670899999999999974966645882-1320225--------2432
Q ss_pred CEEECCCCCCCCCC--------EEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCC
Q ss_conf 20100145677782--------3774343125777765201222231043200010001278764520001056353344
Q gi|254781004|r 319 FAVKCADDTIKDLR--------TFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDD 390 (652)
Q Consensus 319 f~~~~~~~~~~~~~--------~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~D 390 (652)
T Consensus 148 n~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~----P~k~~~~grvyR~D~~Da----THs~~FhQiE 219 (335)
T COG0016 148 NIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKI----PIKIFSPGRVYRNDTVDA----THSPEFHQIE 219 (335)
T ss_pred CCCCCCCCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHCCCC----CCEEECCCCEECCCCCCC----CCCHHEEEEE
T ss_conf 49999984124443787688773002366827659999847999----915845663411788776----4261013367
Q ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2101053767887899999988766552133
Q gi|254781004|r 391 AHVFCTKEQMFNECLKIHNLIISIYKDFGFE 421 (652)
Q Consensus 391 ah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~ 421 (652)
T Consensus 220 Glvvd~----~~s~~~Lkg~L~~f~~~~fg~ 246 (335)
T COG0016 220 GLVVDK----NISFADLKGTLEEFAKKFFGE 246 (335)
T ss_pred EEEEEC----CCCHHHHHHHHHHHHHHHCCC
T ss_conf 899958----956999999999999996377