HHsearch alignment for GI: 254781004 and conserved domain: COG0017
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis].
Probab=96.73 E-value=0.015 Score=37.43 Aligned_cols=112 Identities=17% Similarity=0.286 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHC
Q ss_conf 899999999999887-6896385554324431000112100125554201001456777823774343125777765201
Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHG 351 (652)
Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~ 351 (652)
T Consensus 134 ~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~E--------Gg~elF~v~yf------~~~a~Lt-----qS~QLyke~ 194 (435)
T COG0017 134 FKIRSSILRAIREFFYENGFTEVHTPIITASATE--------GGGELFKVDYF------DKEAYLT-----QSPQLYKEA 194 (435)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCCEEECCCCC--------CCCEEEEEEEC------CCCEEEE-----CCHHHHHHH
T ss_conf 9499999999999997589589659468534789--------98505777506------8566771-----478899999
Q ss_pred CCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHH
Q ss_conf 22223104320001000127876452000105635334421-01053767887899999
Q gi|254781004|r 352 LKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHN 409 (652)
Q Consensus 352 ~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~ 409 (652)
T Consensus 195 ~~~a--l-~rVf~igP~FRAE~s~T~R---HL~EF~~ld~Emaf~~~~d~m~l~E~~i~ 247 (435)
T COG0017 195 LAAA--L-ERVFTIGPTFRAEKSNTRR---HLSEFWMLDPEMAFADLNDVMDLAEELIK 247 (435)
T ss_pred HHHH--H-CCEEEECCCEECCCCCCCC---HHHHHHEECCEECCCCHHHHHHHHHHHHH
T ss_conf 9998--5-7648956725547789700---36667330211136768889999999999