HHsearch alignment for GI: 254781004 and conserved domain: COG0124
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.94 E-value=5e-24 Score=185.61 Aligned_cols=365 Identities=19% Similarity=0.252 Sum_probs=233.7
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCC-CCCCCC-CCCCCCEEECCCCCCCCCCEEEECC
Q ss_conf 87435650107899999999999887-68963855543244310001-121001-2555420100145677782377434
Q gi|254781004|r 262 GSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQ-SGHWDS-YRANMFAVKCADDTIKDLRTFALKP 338 (652)
Q Consensus 262 ~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~-SGh~~~-y~~~mf~~~~~~~~~~~~~~~~LkP 338 (652)
T Consensus 7 prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~-----Dkggr~laLRp 81 (429)
T COG0124 7 PRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFK-----DKGGRSLALRP 81 (429)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCEEEEE-----ECCCCEEEECC
T ss_conf 9986655867789999999999999998099765575511166762016974333321028999-----48998898446
Q ss_pred CCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31257777652012222310432000100012787645200010563533442101053767887899999988766552
Q gi|254781004|r 339 MNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDF 418 (652)
Q Consensus 339 mncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~ 418 (652)
T Consensus 82 e~Tapv~R~~~en~~~~~-~p~k~yy~g~vfRyErPQ----~GR~RqF~Q~g~E~iG~~~--~~~DAEvi~l~~~~l~~l 154 (429)
T COG0124 82 ELTAPVARAVAENKLDLP-KPLKLYYFGPVFRYERPQ----KGRYRQFYQFGVEVIGSDS--PDADAEVIALAVEILEAL 154 (429)
T ss_pred CCCHHHHHHHHHCCCCCC-CCEEEEEECCEECCCCCC----CCCCEEEEECCEEEECCCC--CCCCHHHHHHHHHHHHHC
T ss_conf 674999999995622036-872599833562378888----8875036876767767998--653899999999999974
Q ss_pred CCCCCEECCCCCCCC-----CCCCH--HH----HHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCC--CCCC--CCCC-C
Q ss_conf 133210001465311-----25860--35----7789999999998502121--256675205555--5545--5432-1
Q gi|254781004|r 419 GFEKIMVKLSTRPEK-----RVGSD--AL----WDDAENIMKGVLDTIKNSS--QDRINTGVLLGE--GAFY--GPKF-E 480 (652)
Q Consensus 419 g~~~~~~~ls~~~~~-----~~g~~--~~----~~~ae~~l~~~l~~~~~~~--~~~~~~~~~~g~--~afy--gpki-d 480 (652)
T Consensus 155 Gi~~~~l~iN~~g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~i~~ 234 (429)
T COG0124 155 GIGGFTLEINSRGILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPELLD 234 (429)
T ss_pred CCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHHHHCCHHHHH
T ss_conf 99867999817644788877506116899999974654678987606655343114489998616328999852077640
Q ss_pred C-------------CHHHHCCCCCC--CC-CCCHHHHCCCCCCCEEEE------------------ECCCEEEEEEEEEC
Q ss_conf 1-------------00211033100--12-110111022346741673------------------17972137996403
Q gi|254781004|r 481 Y-------------ILKDAIGRDWQ--CG-TIQVDFNLPSRFNAFYVN------------------SHSEKCHPVMIHRA 526 (652)
Q Consensus 481 ~-------------~~~d~~gr~~~--~~-tiq~df~~p~~f~l~y~~------------------~dg~~~~pvmihr~ 526 (652)
T Consensus 235 ~~~~e~~~~~~~v~~~L~~~g~~~~id~~lvRGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pavG-Fa 313 (429)
T COG0124 235 YLDEESLEHLEELLALLDALGISYEIDPSLVRGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAVG-FA 313 (429)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCEEECCCEECCHHHCCCEEEEEEECCCCCCCCEECCCCCHHHHHHHCCCCCCCEE-EE
T ss_conf 11288999999999999983997798663003613206668999976886443155276615899984899887136-75
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCC-CCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCE
Q ss_conf 41037899999999738708873-37808999857966899999999999987988999758966367666554348988
Q gi|254781004|r 527 VFGSIERFIGIMIENFKGNLPLW-LSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPI 605 (652)
Q Consensus 527 ~~Gs~eR~ia~liE~~~g~~P~w-LAP~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~ 605 (652)
T Consensus 314 i--GveRl~~~l~~~~~---~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~~k~q~k~A~~~g~~~ 388 (429)
T COG0124 314 I--GVERLILALEEEGK---EDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRKLKKQFKYADKLGARF 388 (429)
T ss_pred H--HHHHHHHHHHHCCC---CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCE
T ss_conf 1--79999999997188---777677788899984861599999999999975994899855656899999998779988
Q ss_pred EEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHH
Q ss_conf 999874253258189998898866334299999999873
Q gi|254781004|r 606 IIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKE 644 (652)
Q Consensus 606 ~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e 644 (652)
T Consensus 389 ~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~ 427 (429)
T COG0124 389 AVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKEL 427 (429)
T ss_pred EEEECCHHHHCCCEEEEECCCCCCCEECHHHHHHHHHHH
T ss_conf 999852588659789734777863334499999998742