HHsearch alignment for GI: 254781004 and conserved domain: COG0423
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=339.47 Aligned_cols=376 Identities=22% Similarity=0.285 Sum_probs=254.1
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHH--H-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC-----------
Q ss_conf 87435650107899999999999887--6-896385554324431000112100125554201001456-----------
Q gi|254781004|r 262 GSGVIFWHRKGWKIFQTLISYMRRKI--K-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDT----------- 327 (652)
Q Consensus 262 ~~G~~~wlP~G~~i~~~ie~~ir~~~--~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~----------- 327 (652)
T Consensus 29 ~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv~c~~c~~~yRADHLiEe~l 108 (558)
T COG0423 29 LAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLVECKKCGERYRADHLIEEYL 108 (558)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 34653257751899999999999986624687678425544868886434761346562043462453453368889876
Q ss_pred ----------------------------------------------CCCCCEEEECCCCHHHHHHHHHHCCCCHH-HCCH
Q ss_conf ----------------------------------------------77782377434312577776520122223-1043
Q gi|254781004|r 328 ----------------------------------------------IKDLRTFALKPMNCPGHVAVFNHGLKSYR-ELPV 360 (652)
Q Consensus 328 ----------------------------------------------~~~~~~~~LkPmncp~h~~i~~~~~~SYr-dLPl 360 (652)
T Consensus 109 ~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r~klPF 188 (558)
T COG0423 109 GKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFARNKLPF 188 (558)
T ss_pred HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 41034557878888888861775887688668750344666731457788632456510021215369999975368984
Q ss_pred HHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHH-------------------H--HH--------------HHH
Q ss_conf 200010001278764520001056353344210105376-------------------7--88--------------789
Q gi|254781004|r 361 RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQ-------------------M--FN--------------ECL 405 (652)
Q Consensus 361 rl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq-------------------~--~~--------------e~~ 405 (652)
T Consensus 189 giaQIGKsfRNEISP-r~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~~~ 267 (558)
T COG0423 189 GIAQIGKSFRNEISP-RNGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVENETL 267 (558)
T ss_pred EEEEECHHHCCCCCC-CCCEEEHHHHHHHEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEECCHHH
T ss_conf 888623101465276-6536651234312013588777556863333321002466477764100345544154504438
Q ss_pred -HHHHHHHHHHHHHCCCCCEECCCCCCCCC-----------------CCCHHHH---HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf -99999887665521332100014653112-----------------5860357---78999999999850212125667
Q gi|254781004|r 406 -KIHNLIISIYKDFGFEKIMVKLSTRPEKR-----------------VGSDALW---DDAENIMKGVLDTIKNSSQDRIN 464 (652)
Q Consensus 406 -~~~~~~~~v~~~~g~~~~~~~ls~~~~~~-----------------~g~~~~~---~~ae~~l~~~l~~~~~~~~~~~~ 464 (652)
T Consensus 268 ~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~gWiE~~GiAdRtdYDL~~H~k~s~~~l~v~~~ 347 (558)
T COG0423 268 AYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGGWIELVGIADRTDYDLSRHSKFSGEDLTVFRE 347 (558)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHCCCCCEEEEC
T ss_conf 99999999999980999898066523908776654402327996378866999986135544556565403666223321
Q ss_pred CC--------CCCCCCCCCCCCCCCCHHH---HCC------CCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECC
Q ss_conf 52--------0555555455432110021---103------310012110111022346741673179721379964034
Q gi|254781004|r 465 TG--------VLLGEGAFYGPKFEYILKD---AIG------RDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAV 527 (652)
Q Consensus 465 ~~--------~~~g~~afygpkid~~~~d---~~g------r~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~ 527 (652)
T Consensus 348 ~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~---~i~~~~-~~~~e~~iP~VIE-PS 422 (558)
T COG0423 348 YDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLV---IIEEVE-KVTGEKYIPHVIE-PS 422 (558)
T ss_pred CCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH---HHEEEE-ECCCCEECCCEEC-CC
T ss_conf 477622331001466210381445566777654456666653047621353100---100110-0247550671565-67
Q ss_pred CHHHHHHHHHHHHHH-----C------CCCCCCCCCEEEEEEECC--HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf 103789999999973-----8------708873378089998579--668999999999999879889997589663676
Q gi|254781004|r 528 FGSIERFIGIMIENF-----K------GNLPLWLSPIQAIVTTIT--SSAVEYAQEIANLLKSHHLSIETDFRNETINYK 594 (652)
Q Consensus 528 ~Gs~eR~ia~liE~~-----~------g~~P~wLAP~QV~Iipi~--e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~K 594 (652)
T Consensus 423 fG-idRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i~~~L~~~~~~v~yDdsG-sIGrR 500 (558)
T COG0423 423 FG-IDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFNVDYDDSG-SIGRR 500 (558)
T ss_pred CC-CHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCC-CHHHH
T ss_conf 77-11899999987620113566505995586558527999960224214689999999998539669862888-37665
Q ss_pred HHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHHC
Q ss_conf 665543489889998742532581899988988663342999999998731
Q gi|254781004|r 595 IREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKES 645 (652)
Q Consensus 595 ir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e~ 645 (652)
T Consensus 501 YrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~~~~ 551 (558)
T COG0423 501 YRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLRELI 551 (558)
T ss_pred HHHCCCCCCCEEEEECCCCCCCCCEEEEECCCHHEEEEEHHHHHHHHHHHH
T ss_conf 553344589618995477566784798625761204545999999999984