HHsearch alignment for GI: 254781004 and conserved domain: COG0423

>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=339.47  Aligned_cols=376  Identities=22%  Similarity=0.285  Sum_probs=254.1

Q ss_pred             CCCEEEEECCHHHHHHHHHHHHHHHH--H-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC-----------
Q ss_conf             87435650107899999999999887--6-896385554324431000112100125554201001456-----------
Q gi|254781004|r  262 GSGVIFWHRKGWKIFQTLISYMRRKI--K-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDT-----------  327 (652)
Q Consensus       262 ~~G~~~wlP~G~~i~~~ie~~ir~~~--~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~-----------  327 (652)
T Consensus        29 ~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv~c~~c~~~yRADHLiEe~l  108 (558)
T COG0423          29 LAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLVECKKCGERYRADHLIEEYL  108 (558)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf             34653257751899999999999986624687678425544868886434761346562043462453453368889876


Q ss_pred             ----------------------------------------------CCCCCEEEECCCCHHHHHHHHHHCCCCHH-HCCH
Q ss_conf             ----------------------------------------------77782377434312577776520122223-1043
Q gi|254781004|r  328 ----------------------------------------------IKDLRTFALKPMNCPGHVAVFNHGLKSYR-ELPV  360 (652)
Q Consensus       328 ----------------------------------------------~~~~~~~~LkPmncp~h~~i~~~~~~SYr-dLPl  360 (652)
T Consensus       109 ~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r~klPF  188 (558)
T COG0423         109 GKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFARNKLPF  188 (558)
T ss_pred             HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf             41034557878888888861775887688668750344666731457788632456510021215369999975368984


Q ss_pred             HHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHH-------------------H--HH--------------HHH
Q ss_conf             200010001278764520001056353344210105376-------------------7--88--------------789
Q gi|254781004|r  361 RLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQ-------------------M--FN--------------ECL  405 (652)
Q Consensus       361 rl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq-------------------~--~~--------------e~~  405 (652)
T Consensus       189 giaQIGKsfRNEISP-r~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~~~  267 (558)
T COG0423         189 GIAQIGKSFRNEISP-RNGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVENETL  267 (558)
T ss_pred             EEEEECHHHCCCCCC-CCCEEEHHHHHHHEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEECCHHH
T ss_conf             888623101465276-6536651234312013588777556863333321002466477764100345544154504438


Q ss_pred             -HHHHHHHHHHHHHCCCCCEECCCCCCCCC-----------------CCCHHHH---HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             -99999887665521332100014653112-----------------5860357---78999999999850212125667
Q gi|254781004|r  406 -KIHNLIISIYKDFGFEKIMVKLSTRPEKR-----------------VGSDALW---DDAENIMKGVLDTIKNSSQDRIN  464 (652)
Q Consensus       406 -~~~~~~~~v~~~~g~~~~~~~ls~~~~~~-----------------~g~~~~~---~~ae~~l~~~l~~~~~~~~~~~~  464 (652)
T Consensus       268 ~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~gWiE~~GiAdRtdYDL~~H~k~s~~~l~v~~~  347 (558)
T COG0423         268 AYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGGWIELVGIADRTDYDLSRHSKFSGEDLTVFRE  347 (558)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHCCCCCEEEEC
T ss_conf             99999999999980999898066523908776654402327996378866999986135544556565403666223321


Q ss_pred             CC--------CCCCCCCCCCCCCCCCHHH---HCC------CCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECC
Q ss_conf             52--------0555555455432110021---103------310012110111022346741673179721379964034
Q gi|254781004|r  465 TG--------VLLGEGAFYGPKFEYILKD---AIG------RDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAV  527 (652)
Q Consensus       465 ~~--------~~~g~~afygpkid~~~~d---~~g------r~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~  527 (652)
T Consensus       348 ~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~---~i~~~~-~~~~e~~iP~VIE-PS  422 (558)
T COG0423         348 YDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLV---IIEEVE-KVTGEKYIPHVIE-PS  422 (558)
T ss_pred             CCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH---HHEEEE-ECCCCEECCCEEC-CC
T ss_conf             477622331001466210381445566777654456666653047621353100---100110-0247550671565-67


Q ss_pred             CHHHHHHHHHHHHHH-----C------CCCCCCCCCEEEEEEECC--HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH
Q ss_conf             103789999999973-----8------708873378089998579--668999999999999879889997589663676
Q gi|254781004|r  528 FGSIERFIGIMIENF-----K------GNLPLWLSPIQAIVTTIT--SSAVEYAQEIANLLKSHHLSIETDFRNETINYK  594 (652)
Q Consensus       528 ~Gs~eR~ia~liE~~-----~------g~~P~wLAP~QV~Iipi~--e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~K  594 (652)
T Consensus       423 fG-idRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPikvaVlPL~~k~~l~~~a~~i~~~L~~~~~~v~yDdsG-sIGrR  500 (558)
T COG0423         423 FG-IDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFNVDYDDSG-SIGRR  500 (558)
T ss_pred             CC-CHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCC-CHHHH
T ss_conf             77-11899999987620113566505995586558527999960224214689999999998539669862888-37665


Q ss_pred             HHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHHC
Q ss_conf             665543489889998742532581899988988663342999999998731
Q gi|254781004|r  595 IREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKES  645 (652)
Q Consensus       595 ir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e~  645 (652)
T Consensus       501 YrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~~~~  551 (558)
T COG0423         501 YRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLRELI  551 (558)
T ss_pred             HHHCCCCCCCEEEEECCCCCCCCCEEEEECCCHHEEEEEHHHHHHHHHHHH
T ss_conf             553344589618995477566784798625761204545999999999984