HHsearch alignment for GI: 254781004 and conserved domain: COG1190

>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis].
Probab=96.84  E-value=0.0085  Score=39.15  Aligned_cols=131  Identities=19%  Similarity=0.232  Sum_probs=75.1

Q ss_pred             HHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             411440442267874356501078999999999998876-8963855543244310001121001255542010014567
Q gi|254781004|r  250 AREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTI  328 (652)
Q Consensus       250 g~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~  328 (652)
T Consensus       165 ~RylDLi~N~e~--------r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~-----GGA~A-rP--F~T--hhN--  224 (502)
T COG1190         165 QRYLDLIVNPES--------RQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIP-----GGAAA-RP--FIT--HHN--  224 (502)
T ss_pred             HHHHHHHCCHHH--------HHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCC-----CCCCC-CC--CEE--EEC--
T ss_conf             888898659999--------99999999999999999987797584160003557-----87322-65--012--202--


Q ss_pred             CCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf             77823774343125777765201222231043200010001278764520001056353344210105376788789999
Q gi|254781004|r  329 KDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIH  408 (652)
Q Consensus       329 ~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~  408 (652)
T Consensus       225 ald~dlyLRIApE----LyLKRliVG--G~-erVfEIgr~FRNEGid~t----HNPEFTmlE~Y------~AYaDy~D~m  287 (502)
T COG1190         225 ALDMDLYLRIAPE----LYLKRLIVG--GF-ERVFEIGRNFRNEGIDTT----HNPEFTMLEFY------QAYADYEDLM  287 (502)
T ss_pred             CCCCCEEEEECCH----HHHHHHHHC--CC-HHHEEECCCCCCCCCCCC----CCCCHHHHHHH------HHHHHHHHHH
T ss_conf             3677568762418----999988753--72-142230552003787666----48423568999------9985799999


Q ss_pred             HHHHHHHHH
Q ss_conf             998876655
Q gi|254781004|r  409 NLIISIYKD  417 (652)
Q Consensus       409 ~~~~~v~~~  417 (652)
T Consensus       288 ~ltE~Li~~  296 (502)
T COG1190         288 DLTEELIKE  296 (502)
T ss_pred             HHHHHHHHH
T ss_conf             999999999