HHsearch alignment for GI: 254781004 and conserved domain: KOG1885
>KOG1885 consensus.
Probab=96.24 E-value=0.025 Score=35.91 Aligned_cols=97 Identities=23% Similarity=0.262 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHC
Q ss_conf 899999999999887-6896385554324431000112100125554201001456777823774343125777765201
Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHG 351 (652)
Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~ 351 (652)
T Consensus 225 f~~RakII~~iRkfld~rgFlEVETPmmn~i-----aGGA~A-k--PFIT--~hn--dldm~LylRiAPEL~lK~LvVGG 292 (560)
T KOG1885 225 FRIRAKIISYIRKFLDSRGFLEVETPMMNMI-----AGGATA-K--PFIT--HHN--DLDMDLYLRIAPELYLKMLVVGG 292 (560)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECCHHHCCC-----CCCCCC-C--CEEE--CCC--CCCCCEEEEECHHHHHHHHHHCC
T ss_conf 9999999999999865449568444655254-----686325-7--6043--145--56755145636599999898601
Q ss_pred CCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE
Q ss_conf 22223104320001000127876452000105635334421
Q gi|254781004|r 352 LKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH 392 (652)
Q Consensus 352 ~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah 392 (652)
T Consensus 293 l-------drVYEIGr~FRNEGI----DlTHNPEFTTcEfY 322 (560)
T KOG1885 293 L-------DRVYEIGRQFRNEGI----DLTHNPEFTTCEFY 322 (560)
T ss_pred H-------HHHHHHHHHHHHCCC----CCCCCCCCCHHHHH
T ss_conf 7-------899998787630576----65458774218999