HHsearch alignment for GI: 254781004 and conserved domain: PRK00037
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed.
Probab=100.00 E-value=0 Score=353.01 Aligned_cols=357 Identities=17% Similarity=0.253 Sum_probs=250.8
Q ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCEEEECC
Q ss_conf 874356501078999999999998876-89638555432443100011--210012555420100145677782377434
Q gi|254781004|r 262 GSGVIFWHRKGWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQS--GHWDSYRANMFAVKCADDTIKDLRTFALKP 338 (652)
Q Consensus 262 ~~G~~~wlP~G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~S--Gh~~~y~~~mf~~~~~~~~~~~~~~~~LkP 338 (652)
T Consensus 7 p~G~rD~lP~~~~~~~~i~~~i~~~~~~~Gy~~I~tP~lE~~d~~~~~~g~~~d~~~k~~y~f~-----D~~g~~l~LRp 81 (417)
T PRK00037 7 PRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKIGESTDIVEKEMYTFQ-----DKGGRSLTLRP 81 (417)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCHHHHHEEEEE-----CCCCCEEEECC
T ss_conf 9987767988999999999999999998599585775215098862457763220133205677-----59998898567
Q ss_pred CCHHHHHH-HHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31257777-65201222231043200010001278764520001056353344210105376788789999998876655
Q gi|254781004|r 339 MNCPGHVA-VFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKD 417 (652)
Q Consensus 339 mncp~h~~-i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~ 417 (652)
T Consensus 82 D~T~~iaR~~~~~~~~~~~~~P~r~~y~g~vfR~e~p~--~G--R~REf~Q~g~eiiG~~~~~aD--aEvi~l~~~~l~~ 155 (417)
T PRK00037 82 EGTAPVVRAVIENKLYNELPKPFKLYYIGPMFRYERPQ--KG--RYRQFHQFGVEVIGSDSPAAD--AEVIALAADLLKA 155 (417)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEECCEEECCCCC--CC--CCCCEEECCHHHHCCCCHHHH--HHHHHHHHHHHHH
T ss_conf 76729999999721010688765899872466047898--87--635245635277466417888--9999999999998
Q ss_pred HCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC----CCC-------CCCCCCCCCC--CCCC-CCCH
Q ss_conf 213321000146531125860357789999999998502121256----675-------2055555545--5432-1100
Q gi|254781004|r 418 FGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDR----INT-------GVLLGEGAFY--GPKF-EYIL 483 (652)
Q Consensus 418 ~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~----~~~-------~~~~g~~afy--gpki-d~~~ 483 (652)
T Consensus 156 lGl~~~~i~i~~-----~g~~~~~~~~r~~L~~~l~~~~~~l~~~~~~~~~~~~l~~ld~~~~~~~~~~~~a~~l~~~l~ 230 (417)
T PRK00037 156 LGLKGLVLLLNS-----LGDFEIRANYRKALVGYLEKHLDELDEDSKRRLETNPLRILDKKDKEDQEILADAPKLLDYLD 230 (417)
T ss_pred CCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHC
T ss_conf 399652001056-----776888999999999999997643387887766542778764238879999973625453327
Q ss_pred HHHCCCCCCCCC--------CCHHHHCCCCCC----CE---EEEECC-------------------CEEEEEEEEECCCH
Q ss_conf 211033100121--------101110223467----41---673179-------------------72137996403410
Q gi|254781004|r 484 KDAIGRDWQCGT--------IQVDFNLPSRFN----AF---YVNSHS-------------------EKCHPVMIHRAVFG 529 (652)
Q Consensus 484 ~d~~gr~~~~~t--------iq~df~~p~~f~----l~---y~~~dg-------------------~~~~pvmihr~~~G 529 (652)
T Consensus 231 ~~~~~~l~~l~~~l~~~~~~~~~Dl~lvRgldYYTG~vFe~~~~~~~~~~si~gGGRYD~L~~~fgg~~~PAvG-fa~-- 307 (417)
T PRK00037 231 EESKAHFEELKELLDALGIPYVIDPRLVRGLDYYTGTVFEFVTDGLGAQGTVCGGGRYDGLVEQFGGPPTPAVG-FAI-- 307 (417)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCEEECCCCHHHHHHHHCCCCCCEEE-EEE--
T ss_conf 78899999999999975996998624505766534338999937876501042587315789984899787478-986--
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEE
Q ss_conf 37899999999738708873378089998579668999999999999879889997589663676665543489889998
Q gi|254781004|r 530 SIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIIC 609 (652)
Q Consensus 530 s~eR~ia~liE~~~g~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivI 609 (652)
T Consensus 308 gieRi~~~l~~~-------~~~~~~v~v~~~~~~~~~~a~~i~~~Lr~~gi~v~~~~~~~~l~k~~~~A~~~~~~~~viv 380 (417)
T PRK00037 308 GIERLLLLLEEL-------GLESVDVYVVVLGEEAEAAALKLAEKLRAAGIRVELDLGGRKLKKQFKYADKSGARFALIL 380 (417)
T ss_pred CHHHHHHHHHHC-------CCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 399999999964-------8787767999659899999999999999889969995899899999999998797999998
Q ss_pred CHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHH
Q ss_conf 74253258189998898866334299999999873
Q gi|254781004|r 610 GDKEASERSIGIRRFGSTTTQKVSLLDAIPILTKE 644 (652)
Q Consensus 610 G~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l~~e 644 (652)
T Consensus 381 G~~E~~~~~v~vk~l~~g~q~~v~~~~l~~~lk~~ 415 (417)
T PRK00037 381 GEDELANGTVTLKDLRTGEQETVALDELVEFLKEL 415 (417)
T ss_pred CCHHHHCCEEEEEECCCCCEEEEEHHHHHHHHHHH
T ss_conf 74488679689998999971796599999999997