HHsearch alignment for GI: 254781004 and conserved domain: PRK04172
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional.
Probab=96.74 E-value=0.0075 Score=39.53 Aligned_cols=142 Identities=18% Similarity=0.263 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCC-----------
Q ss_conf 78999999999998876-896385554324431000112100125554201001456777823774343-----------
Q gi|254781004|r 272 GWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPM----------- 339 (652)
Q Consensus 272 G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPm----------- 339 (652)
T Consensus 243 ~~Hp~~~~~~~~r~i~~~mGF~e~~g~~v-e~~fwN--------fdaLf~Pq~HPARd~~Dtf~l~~~~~~~lp~~~~~~ 313 (501)
T PRK04172 243 KKHPYREFIEEVRDILVEMGFEEVKGPIV-ETEFWN--------FDALFQPQDHPAREMQDTFYLKYPSKGELPEELVER 313 (501)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEECCCE-ECCCCC--------HHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHH
T ss_conf 74889999999999999789768536610-100003--------343058989985554453786576545573788988
Q ss_pred ----CHH------------------------HHHHHHHH-CCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCC
Q ss_conf ----125------------------------77776520-1222231043200010001278764520001056353344
Q gi|254781004|r 340 ----NCP------------------------GHVAVFNH-GLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDD 390 (652)
Q Consensus 340 ----ncp------------------------~h~~i~~~-~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~D 390 (652)
T Consensus 314 Vk~~HE~Gg~~gS~Gw~y~w~~~~~~~~~lRthtt~~~~r~l~~~~~~p~~~f~~~rvfR~e~~d~----tH~~~F~Q~e 389 (501)
T PRK04172 314 VKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLAERPEPPGKYFSIGRVFRPETIDA----THLPEFYQLE 389 (501)
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEECCCCEEECCCCCC----CCCCEEEEEE
T ss_conf 999874277678877677778556643010436746679999746899835735650542688886----5441332224
Q ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC
Q ss_conf 2101053767887899999988766552133210001465
Q gi|254781004|r 391 AHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTR 430 (652)
Q Consensus 391 ah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~ 430 (652)
T Consensus 390 g~v~~~----~~~~~~L~g~l~~f~~~~g~~~~rfrp~yf 425 (501)
T PRK04172 390 GIVMGE----DVSFRHLLGILKEFYKRLGFEEVKFRPAYF 425 (501)
T ss_pred EEEECC----CCCHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 899848----887999999999999985886078679989