HHsearch alignment for GI: 254781004 and conserved domain: PRK09194

>PRK09194 prolyl-tRNA synthetase; Provisional.
Probab=100.00  E-value=0  Score=652.53  Aligned_cols=392  Identities=19%  Similarity=0.279  Sum_probs=324.2

Q ss_pred             HHHHHHHHHHHHHCCEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             75320088754114404422678743565010789999999999988768-96385554324431000112100125554
Q gi|254781004|r  240 ESEKRDHRKLAREMDLFHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIKD-DYEEINTPQVLDQHLWQQSGHWDSYRANM  318 (652)
Q Consensus       240 ea~~rdHr~lg~~~~lf~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~~-G~~eV~tP~l~~~~Lw~~SGh~~~y~~~m  318 (652)
T Consensus        17 dae~~Sh~Ll~r---aG~Ir~~~sGiy~~LPlg~rvl~Kie~IIr~em~~iGa~Ev~mp~l~p~elW~~sgR~~~~g~el   93 (570)
T PRK09194         17 DAEVISHQLMLR---AGYIRKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEKYGPEL   93 (570)
T ss_pred             CCCHHHHHHHHH---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHCCHHH
T ss_conf             324566999987---06734143772554243699999999999999986498798535679778987618821236134


Q ss_pred             CEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECC-H
Q ss_conf             201001456777823774343125777765201222231043200010001278764520001056353344210105-3
Q gi|254781004|r  319 FAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCT-K  397 (652)
Q Consensus       319 f~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~-~  397 (652)
T Consensus        94 ~r-----~kDR~~~~~~L~PThEE~it~lv~~~i~SYkqLP~~lYQIqtKfRDE~RP-R~GllR~REF~MKDaYSFd~~~  167 (570)
T PRK09194         94 LR-----LKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRP-RFGLMRGREFIMKDAYSFHADE  167 (570)
T ss_pred             EE-----EECCCCCEEEECCCCHHHHHHHHHHHHCCHHHCCHHEECCCCEECCCCCC-CCCCHHHHHHHHHCCCCCCCCH
T ss_conf             69-----85278985653787389999999985113764680200132333477887-6762345653451245666998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-------------
Q ss_conf             7678878999999887665521332100014653112586035778999999999850212125667-------------
Q gi|254781004|r  398 EQMFNECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRIN-------------  464 (652)
Q Consensus       398 eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~-------------  464 (652)
T Consensus       168 e~l~~tY~~~~~AY~~IF~rlgL~~~~v~ADsG~iGG~~ShEF~~~s~~GED~i~~C~~c~yaaN~E~A~~~~~~~~~~~  247 (570)
T PRK09194        168 ESLDETYDAMYQAYSRIFTRLGLDFRAVEADSGAIGGSASHEFMVLAESGEDTIVYSDESDYAANIEKAEALPPPEPRAA  247 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCC
T ss_conf             99999999999999999998098629999146675886652378763789717999689760564877511477666754


Q ss_pred             -----------------------------------C-------------------CCC----------------------
Q ss_conf             -----------------------------------5-------------------205----------------------
Q gi|254781004|r  465 -----------------------------------T-------------------GVL----------------------  468 (652)
Q Consensus       465 -----------------------------------~-------------------~~~----------------------  468 (652)
T Consensus       248 ~~~~~e~v~TP~~~TIe~l~~~~~v~~~~~iKtl~~~~~~~~~~~~v~v~irGD~evNe~Kl~~~~~~~~l~~a~~eei~  327 (570)
T PRK09194        248 PTEELEKVDTPNAKTIEELAEFLNVPAEKTVKTLLVKADEEGEGELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIR  327 (570)
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHCCCHHHHEEEEEEEEECCCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCHHHHH
T ss_conf             30003042599962199999874999888135689984217887358998226520048988740375312248999999


Q ss_pred             ---CCCCCCCCC------------------------CCCCCHHH--------------------------------HCCC
Q ss_conf             ---555554554------------------------32110021--------------------------------1033
Q gi|254781004|r  469 ---LGEGAFYGP------------------------KFEYILKD--------------------------------AIGR  489 (652)
Q Consensus       469 ---~g~~afygp------------------------kid~~~~d--------------------------------~~gr  489 (652)
T Consensus       328 ~~~g~~~G~iGPv~~~v~ii~D~~v~~~~n~v~GAN~~d~H~~~vn~~RD~~~~~~~Di~~v~~GD~Cp~c~~~L~~~rg  407 (570)
T PRK09194        328 KLFGAPPGFLGPVNLPIPIIADRSVADMSNFVVGANEDDKHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARG  407 (570)
T ss_pred             HHCCCCCCCCCCCCCCCEEEEEHHHHHHCCHHCCCCCCCCEEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEEEEE
T ss_conf             75189877556667881499703452100010035887645406765656786431125552568889889971277403


Q ss_pred             CCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHH-HHHHHHHHHHHH----CCCCCCCCCCEEEEEEECC---
Q ss_conf             10012110111022346741673179721379964034103-789999999973----8708873378089998579---
Q gi|254781004|r  490 DWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGS-IERFIGIMIENF----KGNLPLWLSPIQAIVTTIT---  561 (652)
Q Consensus       490 ~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs-~eR~ia~liE~~----~g~~P~wLAP~QV~Iipi~---  561 (652)
T Consensus       408 IEVGHiF~LGtkYS~~m~a~~~d~~Gk~~p~~M---GCYGIGVsRllaAiiEq~~De~Gi~WP~~IAPf~V~Ii~~~~~~  484 (570)
T PRK09194        408 IEVGHIFQLGTKYSEAMNATFLDENGKAQPLTM---GCYGIGVSRLVAAAIEQNHDERGIIWPKAIAPFDVHIVPVNMKD  484 (570)
T ss_pred             EEEEEEECCCCCCCHHCCCEEECCCCCCCCCEE---EEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCC
T ss_conf             688876312330146209879998898976145---62002467899999998377775407888688499999679998


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHHHHHHHH
Q ss_conf             66899999999999987988999758966367666554348988999874253258189998898866334299999999
Q gi|254781004|r  562 SSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLLDAIPIL  641 (652)
Q Consensus       562 e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~lee~i~~l  641 (652)
T Consensus       485 ~~~~~~ae~iy~~L~~~GidVllDDR~er~G~Kf~DaDLIGiP~~vvvGkk~l~~g~vEvk~R~~~~~~~v~~~el~~~v  564 (570)
T PRK09194        485 EEVRELAEKLYAELLAAGIDVLLDDRKERPGVKFADAELIGIPHRIVVGKRGLAEGIVEYKNRRTGEKEEVKLDELVEFL  564 (570)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEEECCCCEEEECHHHHHHHH
T ss_conf             89999999999999978998999899988536667516418997999926740158599999068975886199999999


Q ss_pred             HH
Q ss_conf             87
Q gi|254781004|r  642 TK  643 (652)
Q Consensus       642 ~~  643 (652)
T Consensus       565 ~~  566 (570)
T PRK09194        565 KE  566 (570)
T ss_pred             HH
T ss_conf             99