HHsearch alignment for GI: 254781004 and conserved domain: PRK12325
>PRK12325 prolyl-tRNA synthetase; Provisional.
Probab=100.00 E-value=0 Score=753.43 Aligned_cols=366 Identities=20% Similarity=0.280 Sum_probs=315.1
Q ss_pred EEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEE
Q ss_conf 442267874356501078999999999998876-8963855543244310001121001255542010014567778237
Q gi|254781004|r 256 FHIAEDGSGVIFWHRKGWKIFQTLISYMRRKIK-DDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTF 334 (652)
Q Consensus 256 f~~~~~~~G~~~wlP~G~~i~~~ie~~ir~~~~-~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~ 334 (652)
T Consensus 30 g~i~~~~~Gl~~wlP~G~~i~~~le~~ir~e~~~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~-----~d~~~~~~ 104 (438)
T PRK12325 30 GMIRQQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRI-----KDRHDREM 104 (438)
T ss_pred CCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCHHHHHHHHCEE-----ECCCCCEE
T ss_conf 7756346873221605899999999999999997499799877658778998628764555742121-----34777743
Q ss_pred EECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEE-CCHHHHHHHHHHHHHHHHH
Q ss_conf 743431257777652012222310432000100012787645200010563533442101-0537678878999999887
Q gi|254781004|r 335 ALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVF-CTKEQMFNECLKIHNLIIS 413 (652)
Q Consensus 335 ~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F-~~~eq~~~e~~~~~~~~~~ 413 (652)
T Consensus 105 ~l~Pmnc~~~~~i~~~~~~SYRdLPlrl~q~g~~~R~E~sp-~~GLlRvReF~m~Dah~F~~~~e~~~~~~~~v~~~y~~ 183 (438)
T PRK12325 105 LYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRP-RFGVMRGREFLMKDAYSFDLDEEGARKSYNRMFVAYLR 183 (438)
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHCCHHHHHHHHEECCCCCC-CCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 13899849999999740342654257887644401120267-64410122333041543246889999999999999999
Q ss_pred HHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC------------
Q ss_conf 66552133210001465311258603577899999999985021212566752055555545543211------------
Q gi|254781004|r 414 IYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEY------------ 481 (652)
Q Consensus 414 v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~------------ 481 (652)
T Consensus 184 if~~lgl~~~~v~ad~g~igg~~s~Ef~~~~~~ged~i~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (438)
T PRK12325 184 TFKRLGLKAIPMRADTGPIGGDLSHEFHILAETGESTVFYD------------KDFLDLPVPGEDIDYDADLQDIVDEWT 251 (438)
T ss_pred HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHEEEC------------HHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99980994489982367667751267476652265024661------------333422567655462356678998887
Q ss_pred ---CHHHHCCCCCCCC-----------------CCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCH-HHHHHHHHHHH
Q ss_conf ---0021103310012-----------------11011102234674167317972137996403410-37899999999
Q gi|254781004|r 482 ---ILKDAIGRDWQCG-----------------TIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFG-SIERFIGIMIE 540 (652)
Q Consensus 482 ---~~~d~~gr~~~~~-----------------tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~G-s~eR~ia~liE 540 (652)
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iEvG~if~lg~~ys~~~~~~~~~~dg~~~~~---~m~~~GIgieR~ia~liE 328 (438)
T PRK12325 252 SLYAATDEMHDEAKFAAVPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGPDGKEVPV---HMGSYGIGVSRLVAAIIE 328 (438)
T ss_pred HHHHHHHHHCCHHHCCCCCHHHHEECCCEEEEEEEECCCCCCHHCCCCCCCCCCCCCCE---EEECCCCCHHHHHHHHHH
T ss_conf 65034664346755376675663011330331243045301522067444877773222---554133428789999999
Q ss_pred HH----CCCCCCCCCCEEEEEEEC---CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHH
Q ss_conf 73----870887337808999857---96689999999999998798899975896636766655434898899987425
Q gi|254781004|r 541 NF----KGNLPLWLSPIQAIVTTI---TSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKE 613 (652)
Q Consensus 541 ~~----~g~~P~wLAP~QV~Iipi---~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke 613 (652)
T Consensus 329 ~~~d~~G~~wP~wlAP~QV~Iipi~~~~~~~~~~A~~l~~~L~~~girv~~Ddr~e~lG~Kir~a~l~giPy~ivVG~ke 408 (438)
T PRK12325 329 ASHDDKGIIWPESVAPFKVGIINLKQGDAACDAACEKLYAALTAAGVDVLYDDTDERAGAKFATMDLIGLPWQIIVGPKG 408 (438)
T ss_pred HHCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 83646885467674865799997069979999999999999997899899989999972999999866999899990780
Q ss_pred HHCCCEEEEECCCCCEEEECHHHHHHHHH
Q ss_conf 32581899988988663342999999998
Q gi|254781004|r 614 ASERSIGIRRFGSTTTQKVSLLDAIPILT 642 (652)
Q Consensus 614 ~e~~~Vtir~R~~~~~~~i~lee~i~~l~ 642 (652)
T Consensus 409 ~e~g~V~vR~R~~~~~~~v~ide~i~~lk 437 (438)
T PRK12325 409 LAEGKVELKDRKTGEREELSVEAAINRLK 437 (438)
T ss_pred HHCCEEEEEECCCCCEEEEEHHHHHHHHC
T ss_conf 54698999998899606764999999860