HHsearch alignment for GI: 254781004 and conserved domain: PRK12420
>PRK12420 histidyl-tRNA synthetase; Provisional.
Probab=99.91 E-value=5.9e-22 Score=171.35 Aligned_cols=350 Identities=15% Similarity=0.204 Sum_probs=209.2
Q ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCEEEECC
Q ss_conf 787435650107899999999999887-689638555432443100011-210012555420100145677782377434
Q gi|254781004|r 261 DGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQS-GHWDSYRANMFAVKCADDTIKDLRTFALKP 338 (652)
Q Consensus 261 ~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~S-Gh~~~y~~~mf~~~~~~~~~~~~~~~~LkP 338 (652)
T Consensus 6 ~~rG~rD~lp~e~~~~~~i~~~~~~~~~~~Gy~~I~tP~~E~~elf~~~~g~~~~i~kemy~f~-----D~~gr~l~LRP 80 (421)
T PRK12420 6 NVKGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQ-----DQGKRDLALRY 80 (421)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCHHHHHEEEEE-----CCCCCEEEECC
T ss_conf 9998887899999999999999999999859947247650118764244788442241107888-----18998798567
Q ss_pred CCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 312577776520122223104320001000127876452000105635334421010537-6788789999998876655
Q gi|254781004|r 339 MNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKE-QMFNECLKIHNLIISIYKD 417 (652)
Q Consensus 339 mncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~e-q~~~e~~~~~~~~~~v~~~ 417 (652)
T Consensus 81 e~Ta~iaR~~a~~-~~-~~~P~k~~y~g~vfR~er-pq-~G--R~ReF~Q~GvEiiG~~~~~aDa---EiI~la~~~l~~ 151 (421)
T PRK12420 81 DLTIPFAKVVAMN-PN-IRLPFKRYEIGKVFRDGP-IK-QG--RFREFIQCDVDIVGVESVMAEA---ELMSMAFELFRT 151 (421)
T ss_pred CCCHHHHHHHHHC-CC-CCCCEEEEEECCEEECCC-CC-CC--CCCEEEECCEEEECCCCHHHHH---HHHHHHHHHHHH
T ss_conf 7658999999977-57-778745888767785389-87-88--5551343575420788778899---999999999996
Q ss_pred HCCCCCEECCCCCCC-----CCCCCHHHHH-HH-----------HHHHHHHHHHHC--------------CCCCCCCC-C
Q ss_conf 213321000146531-----1258603577-89-----------999999998502--------------12125667-5
Q gi|254781004|r 418 FGFEKIMVKLSTRPE-----KRVGSDALWD-DA-----------ENIMKGVLDTIK--------------NSSQDRIN-T 465 (652)
Q Consensus 418 ~g~~~~~~~ls~~~~-----~~~g~~~~~~-~a-----------e~~l~~~l~~~~--------------~~~~~~~~-~ 465 (652)
T Consensus 152 lgl~-~~i~i~~~~l~~~ll~~~~~~~e~~~~~~~~ldk~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (421)
T PRK12420 152 LNLE-VTIQYNNRKLLNGILQAINIPTELTSDVILSLDKIEKIGIDGVRKDVLERGISEEMADTICNTVLSCLQLSIADF 230 (421)
T ss_pred CCCC-EEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 5986-599955299999888870999999999999988765316788999988668888999879998735680138998
Q ss_pred CCCCCC-------C---------CCCCC--CCCCCHHHHCCCCCCCCCCCHHH------H----CCCCCCCEEEEECCCE
Q ss_conf 205555-------5---------54554--32110021103310012110111------0----2234674167317972
Q gi|254781004|r 466 GVLLGE-------G---------AFYGP--KFEYILKDAIGRDWQCGTIQVDF------N----LPSRFNAFYVNSHSEK 517 (652)
Q Consensus 466 ~~~~g~-------~---------afygp--kid~~~~d~~gr~~~~~tiq~df------~----~p~~f~l~y~~~dg~~ 517 (652)
T Consensus 231 ~~~~~~~~~~e~~~~l~~l~~~L~~~gi~~~i~~D~~lVRGLdYYTg~VFE~~~~~~~~~~~i~gGGRYD~Li~~fgg~~ 310 (421)
T PRK12420 231 KEAFNNPLVADGVNELQQLQQYLIALGINENTIFNPFLARGLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDN 310 (421)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 63205855599999999999999976999518776767416664200589999558764434435665054898818998
Q ss_pred -EEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHC-CCEEEEECCCCCCCHHH
Q ss_conf -1379964034103789999999973870887337808999857966899999999999987-98899975896636766
Q gi|254781004|r 518 -CHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSPIQAIVTTITSSAVEYAQEIANLLKSH-HLSIETDFRNETINYKI 595 (652)
Q Consensus 518 -~~pvmihr~~~Gs~eR~ia~liE~~~g~~P~wLAP~QV~Iipi~e~~~eya~~i~~~L~~~-girV~~Ddr~~~~G~Ki 595 (652)
T Consensus 311 ~~~Pav---Gfa~Gierl~~~L~~~~~--~---~~~~~v~v~~~~~~~--~a~~ia~~LR~~~gi~~~~~~~~~~lkkql 380 (421)
T PRK12420 311 MNYPTV---GISFGLDVIYTALSQKET--I---SSTADVFIIPLGTEL--QCLQIAQQLRSTTSLKVELELAGRKLKRAL 380 (421)
T ss_pred CCCCEE---EEEEHHHHHHHHHHCCCC--C---CCCCCEEEEECCCHH--HHHHHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf 999747---998519999999855045--7---988988999787789--999999999845996699965999999999
Q ss_pred HHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEECHH
Q ss_conf 6554348988999874253258189998898866334299
Q gi|254781004|r 596 REHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKVSLL 635 (652)
Q Consensus 596 r~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i~le 635 (652)
T Consensus 381 k~A~k~~~~~~iiiG~~E~~~~~v~lK~l~tg~q~~v~l~ 420 (421)
T PRK12420 381 NYANKENIPYVLIIGEEELSTETVMLRNMKEGSEVKVPLS 420 (421)
T ss_pred HHHHHCCCCEEEEECCHHHHCCEEEEEECCCCCEEEEECC
T ss_conf 9998879999999876388789789998899973798288