HHsearch alignment for GI: 254781004 and conserved domain: PRK12445
>PRK12445 lysyl-tRNA synthetase; Reviewed.
Probab=98.03 E-value=1e-05 Score=59.25 Aligned_cols=116 Identities=14% Similarity=0.177 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 7899999999999887-689638555432443100011210012555420100145677782377434312577776520
Q gi|254781004|r 272 GWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNH 350 (652)
Q Consensus 272 G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~ 350 (652)
T Consensus 183 ~~~~Rs~ii~~iR~~l~~~gF~EVeTPil~~~----~gGa-~---Arpf~t~~----~~~~~~~yL~qS-----PQLykk 245 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI----PGGA-S---ARPFITHH----NALDLDMYLRIA-----PELYLK 245 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCC----CCCC-C---CCEEEECC----CCCCCCEEECCC-----CHHHHH
T ss_conf 99999999999999999779389978875554----5876-6---61033046----678867434169-----399999
Q ss_pred CC-CCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHH
Q ss_conf 12-2223104320001000127876452000105635334421-0105376788789999998
Q gi|254781004|r 351 GL-KSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLI 411 (652)
Q Consensus 351 ~~-~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~ 411 (652)
T Consensus 246 ~Lmvg--Gf-dRvfeI~r~FRnE~~~~----~H~PEFT~lE~e~af~d~~dvm~l~E~li~~i 301 (505)
T PRK12445 246 RLVVG--GF-ERVFEINRNFRNEGISV----RHNPEFTMMELYMAYADYHDLIELTESLFRTL 301 (505)
T ss_pred HHHHC--CC-CCEEEHHHHHHCCCCCC----CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99857--97-44576278760788886----65444543568763278989999999999999