HHsearch alignment for GI: 254781004 and conserved domain: TIGR02367
>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=97.58 E-value=3.1e-05 Score=55.93 Aligned_cols=124 Identities=18% Similarity=0.297 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHH-HHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCC
Q ss_conf 999999999998-8768963855543244310001121001255542010014567778237743431257777652012
Q gi|254781004|r 274 KIFQTLISYMRR-KIKDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGL 352 (652)
Q Consensus 274 ~i~~~ie~~ir~-~~~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~ 352 (652)
T Consensus 240 ~ylGkler~it~ffvdrGfleiksPiliP~ey~ermGi-~ndte------lskqifrvdkn~ClrPmlaP~lynylrkld 312 (453)
T TIGR02367 240 DYLGKLEREITKFFVDRGFLEIKSPILIPLEYVERMGI-DNDTE------LSKQIFRVDKNLCLRPMLAPTLYNYLRKLD 312 (453)
T ss_pred HHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCC-CCCHH------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 67546766676665312402323631010568865077-64025------666666441001012100056899999987
Q ss_pred CCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCC---CEEECCHHHHHHHHHHHHH
Q ss_conf 22231043200010001278764520001056353344---2101053767887899999
Q gi|254781004|r 353 KSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDD---AHVFCTKEQMFNECLKIHN 409 (652)
Q Consensus 353 ~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~D---ah~F~~~eq~~~e~~~~~~ 409 (652)
T Consensus 313 r~lP~-Pik~fe~GPCyrkesdG----kehleeftm~nfCqmGsGCtrenle~~i~~fl~ 367 (453)
T TIGR02367 313 RILPD-PIKVFEVGPCYRKESDG----KEHLEEFTMLNFCQMGSGCTRENLEALIKEFLD 367 (453)
T ss_pred HHCCC-CEEEEEECCCCCCCCCC----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 53789-64798606752435653----356666665554314787326779999999887