HHsearch alignment for GI: 254781004 and conserved domain: TIGR02367

>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. .
Probab=97.58  E-value=3.1e-05  Score=55.93  Aligned_cols=124  Identities=18%  Similarity=0.297  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHH-HHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHCC
Q ss_conf             999999999998-8768963855543244310001121001255542010014567778237743431257777652012
Q gi|254781004|r  274 KIFQTLISYMRR-KIKDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHGL  352 (652)
Q Consensus       274 ~i~~~ie~~ir~-~~~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~~  352 (652)
T Consensus       240 ~ylGkler~it~ffvdrGfleiksPiliP~ey~ermGi-~ndte------lskqifrvdkn~ClrPmlaP~lynylrkld  312 (453)
T TIGR02367       240 DYLGKLEREITKFFVDRGFLEIKSPILIPLEYVERMGI-DNDTE------LSKQIFRVDKNLCLRPMLAPTLYNYLRKLD  312 (453)
T ss_pred             HHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHCCC-CCCHH------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             67546766676665312402323631010568865077-64025------666666441001012100056899999987


Q ss_pred             CCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCC---CEEECCHHHHHHHHHHHHH
Q ss_conf             22231043200010001278764520001056353344---2101053767887899999
Q gi|254781004|r  353 KSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDD---AHVFCTKEQMFNECLKIHN  409 (652)
Q Consensus       353 ~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~D---ah~F~~~eq~~~e~~~~~~  409 (652)
T Consensus       313 r~lP~-Pik~fe~GPCyrkesdG----kehleeftm~nfCqmGsGCtrenle~~i~~fl~  367 (453)
T TIGR02367       313 RILPD-PIKVFEVGPCYRKESDG----KEHLEEFTMLNFCQMGSGCTRENLEALIKEFLD  367 (453)
T ss_pred             HHCCC-CEEEEEECCCCCCCCCC----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             53789-64798606752435653----356666665554314787326779999999887