HHsearch alignment for GI: 254781004 and conserved domain: cd00565
>cd00565 ThiS ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=92.87 E-value=0.29 Score=28.61 Aligned_cols=55 Identities=27% Similarity=0.432 Sum_probs=43.1
Q ss_pred EECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECC----EEECC-CEEEEECC
Q ss_conf 992899887418988899999863611011289999898899774----53036-70798628
Q gi|254781004|r 7 LTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLS----DPVRE-GSIEIITP 64 (652)
Q Consensus 7 I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~----~~l~d-~~i~~i~~ 64 (652)
T Consensus 2 I~i-NG~~~~~~~~~tl~~ll~~~~~--~~~~vaV~~N~~ivpk~~~~~~~l~~gD~iEii~~ 61 (65)
T cd00565 2 ITV-NGEPREVEEGTTLAELLEELGL--PPEGVAVEVNGEIVPRSEWADTELQEGDRIEIVTA 61 (65)
T ss_pred EEE-CCEEEECCCCCCHHHHHHHCCC--CCCCEEEEECCEECCHHHCCCCCCCCCCEEEEEEE
T ss_conf 899-9998886999979999987699--98859999999980878928100899899999987