HHsearch alignment for GI: 254781004 and conserved domain: cd00670
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=2e-40 Score=298.82 Aligned_cols=232 Identities=25% Similarity=0.347 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 7899999999999887-689638555432443100011210012555420100145677782377434312577776520
Q gi|254781004|r 272 GWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNH 350 (652)
Q Consensus 272 G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~ 350 (652)
T Consensus 1 Ga~L~~aL~~~~~~~~~~~G~~~v~~P~l~~~~~~~~sg~~~~f~~~~y~v~~~-~~~~~~~~~~L~PTsE~~~~~~~~~ 79 (235)
T cd00670 1 GTALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDK-GRELRDTDLVLRPAACEPIYQIFSG 79 (235)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCEEEEECC-CCCCCCCCEEEEECCCHHHHHHHHC
T ss_conf 988999999999999998699899898557899992238675452052898237-7666787389930786999999948
Q ss_pred CCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC
Q ss_conf 12222310432000100012787645200010563533442101053767887899999988766552133210001465
Q gi|254781004|r 351 GLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFNECLKIHNLIISIYKDFGFEKIMVKLSTR 430 (652)
Q Consensus 351 ~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~e~~~~~~~~~~v~~~~g~~~~~~~ls~~ 430 (652)
T Consensus 80 ~i~s~~dLPlr~~~~s~~fR~E~~~-~~Gl~Rv~eF~k~E~~~~~~~e~~~~~~~~~~~~~~~i~~~L~l~y~v~-~~~~ 157 (235)
T cd00670 80 EILSYRALPLRLDQIGPCFRHEPSG-RRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLPVRVV-VADD 157 (235)
T ss_pred CCCCHHHCCEEEEEECCEECCCCCC-CCCCEEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEE-ECCC
T ss_conf 3287687995454456533367899-9998367899985079996889999999999999999999869977999-7586
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC-CCCCCCCCCC-HHHHCCCCCCC
Q ss_conf 311258603577899999999985021212566752055555545543211002110-3310012110-11102234674
Q gi|254781004|r 431 PEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYILKDAI-GRDWQCGTIQ-VDFNLPSRFNA 508 (652)
Q Consensus 431 ~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~~~d~~-gr~~~~~tiq-~df~~p~~f~l 508 (652)
T Consensus 158 ~d~g~~~~~~--~--------------------------~~~a--~~~~d~E~~~p~~~~~~e~~s~S~~~~~q~r~~~~ 207 (235)
T cd00670 158 PFFGRGGKRG--L--------------------------DAGR--ETVVEFELLLPLPGRAKETAVGSANVHLDHFGASF 207 (235)
T ss_pred CCCCCCCCCC--C--------------------------CCCC--CCCEEEEEEECCCCCEEEEEEEEECCCHHHCCCCC
T ss_conf 1337664100--0--------------------------2565--55646999977899467899930257844430253
Q ss_pred EEEEECCCEEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 1673179721379964034103789999999
Q gi|254781004|r 509 FYVNSHSEKCHPVMIHRAVFGSIERFIGIMI 539 (652)
Q Consensus 509 ~y~~~dg~~~~pvmihr~~~Gs~eR~ia~li 539 (652)
T Consensus 208 ~~~~~~~~~~ht~---~~s~~a~~R~l~All 235 (235)
T cd00670 208 KIDEDGGGRAHTG---CGGAGGEERLVLALL 235 (235)
T ss_pred EEECCCCCEEEEE---CCCCCHHHHHHHHHC
T ss_conf 0146999689997---263288999999869