HHsearch alignment for GI: 254781004 and conserved domain: cd00738
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.89 E-value=1.8e-22 Score=174.97 Aligned_cols=90 Identities=22% Similarity=0.419 Sum_probs=87.3
Q ss_pred CEEEEEEECCH---HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCC
Q ss_conf 80899985796---689999999999998798899975896636766655434898899987425325818999889886
Q gi|254781004|r 552 PIQAIVTTITS---SAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTT 628 (652)
Q Consensus 552 P~QV~Iipi~e---~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~ 628 (652)
T Consensus 1 P~qv~Iipi~~~~~e~~~~a~~l~~~L~~~gi~v~~Ddr~~~~g~k~~~a~~~giP~~iiiG~~e~e~~~v~vr~r~~~e 80 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGEDELENGKVTVKSRDTGE 80 (94)
T ss_pred CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCHHHHCCEEEEEECCCCC
T ss_conf 91999998438977899999999999998899899987999975999999974998999988003437989999989997
Q ss_pred EEEECHHHHHHHH
Q ss_conf 6334299999999
Q gi|254781004|r 629 TQKVSLLDAIPIL 641 (652)
Q Consensus 629 ~~~i~lee~i~~l 641 (652)
T Consensus 81 q~~v~~~e~~~~l 93 (94)
T cd00738 81 SETLHVDELPEFL 93 (94)
T ss_pred EEEEEHHHHHHHH
T ss_conf 7898999988865