HHsearch alignment for GI: 254781004 and conserved domain: cd00771

>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00  E-value=0  Score=781.67  Aligned_cols=296  Identities=53%  Similarity=1.008  Sum_probs=287.9

Q ss_pred             HHHHHHHHCCEEEECC-CCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             0887541144044226-787435650107899999999999887-68963855543244310001121001255542010
Q gi|254781004|r  245 DHRKLAREMDLFHIAE-DGSGVIFWHRKGWKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVK  322 (652)
Q Consensus       245 dHr~lg~~~~lf~~~~-~~~G~~~wlP~G~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~  322 (652)
T Consensus         1 dHrklg~el~lf~~~~~~g~G~~~w~P~G~~i~~~L~~~ir~~~~~~Gy~eV~tP~i~~~~Lw~~SGH~~~y~e~mf~~~   80 (298)
T cd00771           1 DHRRLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE   80 (298)
T ss_pred             CHHHHCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCEEEEE
T ss_conf             94574401157511777667657883888999999999999999986998998861266556754776311368568888


Q ss_pred             CCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCEEECCHHHHHH
Q ss_conf             01456777823774343125777765201222231043200010001278764520001056353344210105376788
Q gi|254781004|r  323 CADDTIKDLRTFALKPMNCPGHVAVFNHGLKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAHVFCTKEQMFN  402 (652)
Q Consensus       323 ~~~~~~~~~~~~~LkPmncp~h~~i~~~~~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah~F~~~eq~~~  402 (652)
T Consensus        81 ~------~~~~~~LkPmnCp~h~~i~~~~~~SYrdLPlR~~E~g~~~R~E~sG~L~GL~RvR~FtqdDaHiFc~~eQ~~~  154 (298)
T cd00771          81 E------EDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKE  154 (298)
T ss_pred             E------CCCCEEEECCCCHHHHHHHHCCCCCHHHCCHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHH
T ss_conf             6------2541688506868899998635567343467652075055476776755744555674576324416889999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             78999999887665521332100014653112586035778999999999850212125667520555555455432110
Q gi|254781004|r  403 ECLKIHNLIISIYKDFGFEKIMVKLSTRPEKRVGSDALWDDAENIMKGVLDTIKNSSQDRINTGVLLGEGAFYGPKFEYI  482 (652)
Q Consensus       403 e~~~~~~~~~~v~~~~g~~~~~~~ls~~~~~~~g~~~~~~~ae~~l~~~l~~~~~~~~~~~~~~~~~g~~afygpkid~~  482 (652)
T Consensus       155 E~~~~~~~~~~vy~~fG~~~~~~~ls~r~ek~~g~~e~W~~ae~~l~~~l~~~~------~~~~~~~ge~AFyGPKiD~~  228 (298)
T cd00771         155 EIKGVLDLIKEVYSDFGFFDYKVELSTRPEKFIGSDEVWEKAEAALREALEEIG------LPYEINEGEGAFYGPKIDFH  228 (298)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC------CCCEECCCCCEEEEEEEEEE
T ss_conf             999999999999998288732489964787677998999999999999999759------98575788600130058999


Q ss_pred             HHHHCCCCCCCCCCCHHHHCCCCCCCEEEEECCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             0211033100121101110223467416731797213799640341037899999999738708873378
Q gi|254781004|r  483 LKDAIGRDWQCGTIQVDFNLPSRFNAFYVNSHSEKCHPVMIHRAVFGSIERFIGIMIENFKGNLPLWLSP  552 (652)
Q Consensus       483 ~~d~~gr~~~~~tiq~df~~p~~f~l~y~~~dg~~~~pvmihr~~~Gs~eR~ia~liE~~~g~~P~wLAP  552 (652)
T Consensus       229 ~~D~lgR~~q~~TiQlDf~lp~rF~l~Y~~~dg~~~~Pv~iHrai~GS~ERfia~LiE~~~G~~P~WLaP  298 (298)
T cd00771         229 VKDALGREWQCSTIQLDFNLPERFDLTYIGEDGEKKRPVMIHRAILGSIERFIGILIEHYAGKFPLWLAP  298 (298)
T ss_pred             EEECCCCEEEEEEEEEEECCHHHCCCEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             8606897687014688506743269889989998648989995576709999999998607998866593