HHsearch alignment for GI: 254781004 and conserved domain: cd00777
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=97.88 E-value=4.2e-05 Score=55.05 Aligned_cols=117 Identities=19% Similarity=0.265 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCHHHHHHHHHHC
Q ss_conf 899999999999887-6896385554324431000112100125554201001456777823774343125777765201
Q gi|254781004|r 273 WKIFQTLISYMRRKI-KDDYEEINTPQVLDQHLWQQSGHWDSYRANMFAVKCADDTIKDLRTFALKPMNCPGHVAVFNHG 351 (652)
Q Consensus 273 ~~i~~~ie~~ir~~~-~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~~~~~~~~~~~~~~~LkPmncp~h~~i~~~~ 351 (652)
T Consensus 1 lr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~----~ega-----~~f~~~~---~~~~~~~~~L~~Sp-e----l~~k~ 63 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKST----PEGA-----RDFLVPS---RLHPGKFYALPQSP-Q----LFKQL 63 (280)
T ss_pred CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCC----CCCC-----CCCEECC---CCCCCCCCCCCCCH-H----HHHHH
T ss_conf 96699999999999998898998798106878----7767-----6644244---16887603688798-9----99999
Q ss_pred CCCHHHCCHHHHHHEEEECCCCCCCCEEEEECCCCCCCCCE-EECCHHHHHHHHHHHHHHHH
Q ss_conf 22223104320001000127876452000105635334421-01053767887899999988
Q gi|254781004|r 352 LKSYRELPVRLAEFGSVYRNEPSGSLHGLMRVRGFTQDDAH-VFCTKEQMFNECLKIHNLII 412 (652)
Q Consensus 352 ~~SYrdLPlrl~e~~~~~R~E~sg~l~GL~R~ReF~~~Dah-~F~~~eq~~~e~~~~~~~~~ 412 (652)
T Consensus 64 l~~-~g~-~rvf~i~~~FR~E~~~~~----h~~EFtmLE~e~~~~~~~d~m~~~E~li~~i~ 119 (280)
T cd00777 64 LMV-SGF-DRYFQIARCFRDEDLRAD----RQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVF 119 (280)
T ss_pred HHH-CCC-CCCEEEECEECCCCCCCC----CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 985-687-775798451747888876----63477623442268889999999999999999