HHsearch alignment for GI: 254781004 and conserved domain: cd00859
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.66 E-value=1.4e-15 Score=127.43 Aligned_cols=90 Identities=16% Similarity=0.283 Sum_probs=87.6
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEEE
Q ss_conf 08999857966899999999999987988999758966367666554348988999874253258189998898866334
Q gi|254781004|r 553 IQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQKV 632 (652)
Q Consensus 553 ~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~i 632 (652)
T Consensus 2 vdv~ii~~~~~~~~~a~~i~~~LR~~gi~v~~~~~~~~l~kqlk~A~k~~~~~~iiiG~~E~~~~~v~iK~~~t~~q~~i 81 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQETV 81 (91)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHHHCCEEEEEECCCCCEEEE
T ss_conf 48999981869999999999999988993999736887889999999709988999865142169799999999958998
Q ss_pred CHHHHHHHHH
Q ss_conf 2999999998
Q gi|254781004|r 633 SLLDAIPILT 642 (652)
Q Consensus 633 ~lee~i~~l~ 642 (652)
T Consensus 82 ~~~eli~~lK 91 (91)
T cd00859 82 ALDELVEELK 91 (91)
T ss_pred EHHHHHHHHC
T ss_conf 8999999759