HHsearch alignment for GI: 254781004 and conserved domain: cd00860

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.90  E-value=7.5e-23  Score=177.50  Aligned_cols=91  Identities=34%  Similarity=0.577  Sum_probs=89.5

Q ss_pred             CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEE
Q ss_conf             80899985796689999999999998798899975896636766655434898899987425325818999889886633
Q gi|254781004|r  552 PIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQK  631 (652)
Q Consensus       552 P~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~  631 (652)
T Consensus         1 P~QV~Iipi~~~~~~ya~~i~~~Lr~~girv~~D~~~~~lg~ki~~a~~~~ip~~iiiG~~E~~~~~v~vr~r~~~~q~~   80 (91)
T cd00860           1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDLGS   80 (91)
T ss_pred             CEEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCEEEEEECCCCCEEE
T ss_conf             92899998888799999999999998899899965889875999999981999899996046538979999989993678


Q ss_pred             ECHHHHHHHHH
Q ss_conf             42999999998
Q gi|254781004|r  632 VSLLDAIPILT  642 (652)
Q Consensus       632 i~lee~i~~l~  642 (652)
T Consensus        81 v~~~~~i~~lk   91 (91)
T cd00860          81 MSLDEFIEKLK   91 (91)
T ss_pred             EEHHHHHHHHC
T ss_conf             77999999749