HHsearch alignment for GI: 254781004 and conserved domain: cd00860
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.90 E-value=7.5e-23 Score=177.50 Aligned_cols=91 Identities=34% Similarity=0.577 Sum_probs=89.5
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCCEEE
Q ss_conf 80899985796689999999999998798899975896636766655434898899987425325818999889886633
Q gi|254781004|r 552 PIQAIVTTITSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTTTQK 631 (652)
Q Consensus 552 P~QV~Iipi~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~~~~ 631 (652)
T Consensus 1 P~QV~Iipi~~~~~~ya~~i~~~Lr~~girv~~D~~~~~lg~ki~~a~~~~ip~~iiiG~~E~~~~~v~vr~r~~~~q~~ 80 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDLGS 80 (91)
T ss_pred CEEEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCEEEEEECCCCCEEE
T ss_conf 92899998888799999999999998899899965889875999999981999899996046538979999989993678
Q ss_pred ECHHHHHHHHH
Q ss_conf 42999999998
Q gi|254781004|r 632 VSLLDAIPILT 642 (652)
Q Consensus 632 i~lee~i~~l~ 642 (652)
T Consensus 81 v~~~~~i~~lk 91 (91)
T cd00860 81 MSLDEFIEKLK 91 (91)
T ss_pred EEHHHHHHHHC
T ss_conf 77999999749