HHsearch alignment for GI: 254781004 and conserved domain: cd00861
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.90 E-value=4.3e-23 Score=179.20 Aligned_cols=91 Identities=21% Similarity=0.335 Sum_probs=88.4
Q ss_pred CEEEEEEEC---CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCC
Q ss_conf 808999857---96689999999999998798899975896636766655434898899987425325818999889886
Q gi|254781004|r 552 PIQAIVTTI---TSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTT 628 (652)
Q Consensus 552 P~QV~Iipi---~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~ 628 (652)
T Consensus 1 P~qv~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~~ael~GiP~~iiiG~k~~~~~~v~vr~R~~~~ 80 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGE 80 (94)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHCCEEEEEECCCCC
T ss_conf 94999997489988999999999999988798999987997277999999974998799990662117999999978995
Q ss_pred EEEECHHHHHHHHH
Q ss_conf 63342999999998
Q gi|254781004|r 629 TQKVSLLDAIPILT 642 (652)
Q Consensus 629 ~~~i~lee~i~~l~ 642 (652)
T Consensus 81 ~~~v~~~~~i~~ik 94 (94)
T cd00861 81 KEEISIDELLEFLQ 94 (94)
T ss_pred EEEECHHHHHHHHC
T ss_conf 68971999999759