HHsearch alignment for GI: 254781004 and conserved domain: cd00861

>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.90  E-value=4.3e-23  Score=179.20  Aligned_cols=91  Identities=21%  Similarity=0.335  Sum_probs=88.4

Q ss_pred             CEEEEEEEC---CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECHHHHHCCCEEEEECCCCC
Q ss_conf             808999857---96689999999999998798899975896636766655434898899987425325818999889886
Q gi|254781004|r  552 PIQAIVTTI---TSSAVEYAQEIANLLKSHHLSIETDFRNETINYKIREHSIKKIPIIIICGDKEASERSIGIRRFGSTT  628 (652)
Q Consensus       552 P~QV~Iipi---~e~~~eya~~i~~~L~~~girV~~Ddr~~~~G~Kir~a~l~giP~~ivIG~ke~e~~~Vtir~R~~~~  628 (652)
T Consensus         1 P~qv~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~~ael~GiP~~iiiG~k~~~~~~v~vr~R~~~~   80 (94)
T cd00861           1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGE   80 (94)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCHHCCEEEEEECCCCC
T ss_conf             94999997489988999999999999988798999987997277999999974998799990662117999999978995


Q ss_pred             EEEECHHHHHHHHH
Q ss_conf             63342999999998
Q gi|254781004|r  629 TQKVSLLDAIPILT  642 (652)
Q Consensus       629 ~~~i~lee~i~~l~  642 (652)
T Consensus        81 ~~~v~~~~~i~~ik   94 (94)
T cd00861          81 KEEISIDELLEFLQ   94 (94)
T ss_pred             EEEECHHHHHHHHC
T ss_conf             68971999999759