HHsearch alignment for GI: 254781004 and conserved domain: cd01668
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.22 E-value=2.6e-06 Score=63.44 Aligned_cols=58 Identities=34% Similarity=0.532 Sum_probs=53.2
Q ss_pred EEECCCCCEEECCCCCCHHHHHHHHCCCCCCCEEEEEECCEEEECCEEECCC-EEEEEC
Q ss_conf 8992899887418988899999863611011289999898899774530367-079862
Q gi|254781004|r 6 KLTFPDGSIKNFPVHATGSDVAESISRSLAKKAVAVAINGKVCDLSDPVREG-SIEIIT 63 (652)
Q Consensus 6 ~I~lpDG~~~~~~~g~t~~dia~~i~~~~~~~~vaa~vng~l~dL~~~l~d~-~i~~i~ 63 (652)
T Consensus 2 ~vftP~G~~~~LP~GaT~lDfAy~iht~lG~~~~~a~vNg~~~~l~~~L~~GD~VeIiT 60 (60)
T cd01668 2 YVFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred EEECCCCCEEECCCCCCHHHEHHHHCCCHHHEEEEEEECCEECCCCCCCCCCCEEEEEC
T ss_conf 99899997787899981410433554101422689999999989876828999999879